RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 RNF2Q99496 336 aa16.57■□□□□ 0.24
TMEM260-203ENST00000539559 FOXA2Q9Y261 457 aaPredicted RBP16.57■□□□□ 0.24
TMEM260-203ENST00000539559 F2RL2O00254 374 aa16.57■□□□□ 0.24
TMEM260-203ENST00000539559 NIT1Q86X76 327 aa16.57■□□□□ 0.24
TMEM260-203ENST00000539559 RND1Q92730 232 aa16.57■□□□□ 0.24
TMEM260-203ENST00000539559 LY96Q9Y6Y9 160 aa16.57■□□□□ 0.24
TMEM260-203ENST00000539559 TCF21O43680 179 aa16.56■□□□□ 0.24
TMEM260-203ENST00000539559 CHRNB4P30926 498 aa16.56■□□□□ 0.24
TMEM260-203ENST00000539559 Q6ZN92 141 aa16.56■□□□□ 0.24
TMEM260-203ENST00000539559 OR4B1Q8NGF8 309 aa16.56■□□□□ 0.24
TMEM260-203ENST00000539559 TXN2Q99757 166 aa16.56■□□□□ 0.24
TMEM260-203ENST00000539559 RP1L1Q8IWN7 2480 aaPredicted RBP16.56■□□□□ 0.24
TMEM260-203ENST00000539559 HYPMO75409 117 aa16.56■□□□□ 0.24
TMEM260-203ENST00000539559 ZNF324O75467 553 aaPredicted RBP16.56■□□□□ 0.24
TMEM260-203ENST00000539559 TECRQ9NZ01 308 aaKnown RBP16.56■□□□□ 0.24
TMEM260-203ENST00000539559 SIAH2O43255 324 aa16.55■□□□□ 0.24
TMEM260-203ENST00000539559 IGFL2Q6UWQ7 119 aa16.55■□□□□ 0.24
TMEM260-203ENST00000539559 TSKUQ8WUA8 353 aa16.55■□□□□ 0.24
TMEM260-203ENST00000539559 SSBP2P81877 361 aaPredicted RBP16.55■□□□□ 0.24
TMEM260-203ENST00000539559 LHFPL4Q7Z7J7 247 aa16.55■□□□□ 0.24
TMEM260-203ENST00000539559 SGK494Q96LW2 274 aa16.55■□□□□ 0.24
TMEM260-203ENST00000539559 TMEM167BQ9NRX6 74 aa16.55■□□□□ 0.24
TMEM260-203ENST00000539559 TRBV9A0A0B4J1U6 114 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 TM4SF5O14894 197 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 AMY1AP04745 511 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 USF1P22415 310 aaPredicted RBP16.54■□□□□ 0.24
TMEM260-203ENST00000539559 GAGE1Q13065 139 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 COL5A1-AS1Q5SY13 56 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 WDR73Q6P4I2 378 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 DNAJC4Q9NNZ3 241 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 TUBG2Q9NRH3 451 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 OSTCQ9NRP0 149 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 PYYP10082 97 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 GPR6P46095 362 aaPredicted RBP16.54■□□□□ 0.24
TMEM260-203ENST00000539559 ZNF355PQ9NSJ1 428 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 ZNF292O60281 2723 aa16.54■□□□□ 0.24
TMEM260-203ENST00000539559 DPRXA6NFQ7 191 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 APCSP02743 223 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 IGLC2P0DOY2 106 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 IGLC3P0DOY3 106 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 DEFB109BQ30KR1 87 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 PRR27Q6MZM9 219 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 OR2T6Q8NHC8 308 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 ITLN1Q8WWA0 313 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 SSBP4Q9BWG4 385 aaPredicted RBP16.53■□□□□ 0.24
TMEM260-203ENST00000539559 SLC25A10Q9UBX3 287 aaPredicted RBP16.53■□□□□ 0.24
TMEM260-203ENST00000539559 PLCE1Q9P212 2302 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 NDUFB8O95169 186 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 KIR2DS2P43631 304 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 OR10J3Q5JRS4 329 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 PPP1R35Q8TAP8 253 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 SLC35E1Q96K37 410 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 IGF2BP2-AS1Q96M15 143 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 NAV3Q8IVL0 2385 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 TRAV17A0A0B4J275 112 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 GDF5OSQ5U4N7 250 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 MBNL2Q5VZF2 373 aaKnown RBP16.53■□□□□ 0.24
TMEM260-203ENST00000539559 TP73-AS1Q9UF72 201 aa16.53■□□□□ 0.24
TMEM260-203ENST00000539559 RIF1Q5UIP0 2472 aaKnown RBP16.52■□□□□ 0.24
TMEM260-203ENST00000539559 DSCAML1Q8TD84 2053 aa16.52■□□□□ 0.24
TMEM260-203ENST00000539559 DMXL1Q9Y485 3027 aa16.52■□□□□ 0.24
TMEM260-203ENST00000539559 PLXNB1O43157 2135 aa16.52■□□□□ 0.24
TMEM260-203ENST00000539559 A0A1W2PN81 502 aa16.52■□□□□ 0.24
TMEM260-203ENST00000539559 MT-ND6P03923 174 aa16.52■□□□□ 0.24
TMEM260-203ENST00000539559 OR5G3P0C626 314 aa16.52■□□□□ 0.24
TMEM260-203ENST00000539559 CGB3P0DN86 165 aa16.52■□□□□ 0.24
TMEM260-203ENST00000539559 CGB7P0DN87 165 aa16.52■□□□□ 0.24
TMEM260-203ENST00000539559 GUSBP1Q15486 140 aa16.52■□□□□ 0.24
TMEM260-203ENST00000539559 SLC35D1Q9NTN3 355 aa16.52■□□□□ 0.24
TMEM260-203ENST00000539559 ROS1P08922 2347 aa16.52■□□□□ 0.24
TMEM260-203ENST00000539559 ZFHX2Q9C0A1 2572 aaPredicted RBP16.52■□□□□ 0.23
TMEM260-203ENST00000539559 TEX50A0A1B0GTY4 177 aa16.52■□□□□ 0.23
TMEM260-203ENST00000539559 SMIM27A0A1W2PRY6 76 aa16.52■□□□□ 0.23
TMEM260-203ENST00000539559 ISLRO14498 428 aa16.52■□□□□ 0.23
TMEM260-203ENST00000539559 PPOXP50336 477 aa16.52■□□□□ 0.23
TMEM260-203ENST00000539559 HNRNPA3P51991 378 aaKnown RBP16.52■□□□□ 0.23
TMEM260-203ENST00000539559 CR1LQ2VPA4 569 aa16.52■□□□□ 0.23
TMEM260-203ENST00000539559 MRPL52Q86TS9 123 aaKnown RBP16.52■□□□□ 0.23
TMEM260-203ENST00000539559 ZNF439Q8NDP4 499 aa16.52■□□□□ 0.23
TMEM260-203ENST00000539559 CLEC7AQ9BXN2 247 aa16.52■□□□□ 0.23
TMEM260-203ENST00000539559 PLAUP00749 431 aa16.51■□□□□ 0.23
TMEM260-203ENST00000539559 HINT1P49773 126 aaPredicted RBP16.51■□□□□ 0.23
TMEM260-203ENST00000539559 UBE2L3P68036 154 aaKnown RBP16.51■□□□□ 0.23
TMEM260-203ENST00000539559 TNXAQ16473 311 aa16.51■□□□□ 0.23
TMEM260-203ENST00000539559 C18orf32Q8TCD1 76 aa16.51■□□□□ 0.23
TMEM260-203ENST00000539559 IGHG3P01860 377 aa16.51■□□□□ 0.23
TMEM260-203ENST00000539559 PRRX1P54821 245 aa16.51■□□□□ 0.23
TMEM260-203ENST00000539559 SLC25A33Q9BSK2 321 aa16.51■□□□□ 0.23
TMEM260-203ENST00000539559 DCAF16Q9NXF7 216 aa16.51■□□□□ 0.23
TMEM260-203ENST00000539559 UQCR10Q9UDW1 63 aa16.51■□□□□ 0.23
TMEM260-203ENST00000539559 KBTBD11-OT1A0A1B0GTJ5 212 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 E7EUB6 86 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 M0R1B8 84 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 IGLV1-44P01699 117 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 SFTPCP11686 197 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 MFAP2P55001 183 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 PRCDQ00LT1 54 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 FAM216BQ8N7L0 139 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 ZFP30Q9Y2G7 519 aa16.5■□□□□ 0.23
TMEM260-203ENST00000539559 HLA-DQA1P01909 254 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms