RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 TFF1P04155 84 aa11.54□□□□□ -0.56
LIG1-203ENST00000536218 ASPHD1Q5U4P2 390 aa11.54□□□□□ -0.56
LIG1-203ENST00000536218 OR2D2Q9H210 308 aa11.54□□□□□ -0.56
LIG1-203ENST00000536218 PTPRBP23467 1997 aa11.54□□□□□ -0.56
LIG1-203ENST00000536218 REG1AP05451 166 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 USF1P22415 310 aaPredicted RBP11.53□□□□□ -0.56
LIG1-203ENST00000536218 PLP1P60201 277 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 C18orf32Q8TCD1 76 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 ZDHHC16Q969W1 377 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 THYN1Q9P016 225 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 OR2W1Q9Y3N9 320 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 V9GYV3 84 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 SH2D7A6NKC9 451 aaPredicted RBP11.53□□□□□ -0.56
LIG1-203ENST00000536218 J3QT63 122 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 CX3CL1P78423 397 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 INO80CQ6PI98 192 aaPredicted RBP11.53□□□□□ -0.56
LIG1-203ENST00000536218 WDR31Q8NA23 367 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 LSM10Q969L4 123 aaKnown RBP11.53□□□□□ -0.56
LIG1-203ENST00000536218 NPVFQ9HCQ7 196 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 DKK4Q9UBT3 224 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 YTHDF2Q9Y5A9 579 aaKnown RBP11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A10PA6NDY2 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A18PA6NE21 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A16PA6NEW6 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A20PA6NIJ5 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A8PA6NJQ4 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A7PA6NKC0 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A22PA8MWA6 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A12PA8MX19 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A5PA8MXJ8 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A23PA8MXZ1 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 CA1P00915 261 aaPredicted RBP11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A15PP0C7V4 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A13PP0C7W8 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A14PP0C7W9 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 FAM90A24PP0C7X0 464 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 PPIAL4GP0DN37 164 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 GPR6P46095 362 aaPredicted RBP11.53□□□□□ -0.56
LIG1-203ENST00000536218 SLAQ13239 276 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 EAF1Q96JC9 268 aaPredicted RBP11.53□□□□□ -0.56
LIG1-203ENST00000536218 OR1A1Q9P1Q5 309 aa11.53□□□□□ -0.56
LIG1-203ENST00000536218 NBASA2RRP1 2371 aa11.52□□□□□ -0.56
LIG1-203ENST00000536218 WNT9BO14905 357 aa11.52□□□□□ -0.57
LIG1-203ENST00000536218 ZG16O60844 167 aa11.52□□□□□ -0.57
LIG1-203ENST00000536218 FGFRL1Q8N441 504 aa11.52□□□□□ -0.57
LIG1-203ENST00000536218 OR10W1Q8NGF6 305 aa11.52□□□□□ -0.57
LIG1-203ENST00000536218 OR8B3Q8NGG8 313 aa11.52□□□□□ -0.57
LIG1-203ENST00000536218 TMEM70Q9BUB7 260 aa11.52□□□□□ -0.57
LIG1-203ENST00000536218 ZNF331Q9NQX6 463 aaPredicted RBP11.52□□□□□ -0.57
LIG1-203ENST00000536218 PROCRQ9UNN8 238 aa11.52□□□□□ -0.57
LIG1-203ENST00000536218 H3BUT2 72 aa11.52□□□□□ -0.57
LIG1-203ENST00000536218 AMY1AP04745 511 aa11.52□□□□□ -0.57
LIG1-203ENST00000536218 CECR9P0C854 216 aa11.52□□□□□ -0.57
LIG1-203ENST00000536218 RPL8P62917 257 aaKnown RBP11.52□□□□□ -0.57
LIG1-203ENST00000536218 OR51B2Q9Y5P1 312 aa11.52□□□□□ -0.57
LIG1-203ENST00000536218 RRHO14718 337 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 TIMM8AO60220 97 aaPredicted RBP11.51□□□□□ -0.57
LIG1-203ENST00000536218 HLA-DQA1P01909 254 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 TBR1Q16650 682 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 ST20Q9HBF5 79 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 OR2H2O95918 312 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 CEACAM3P40198 252 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 PRAMEF6Q5VXH4 476 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 PQLC2Q6ZP29 291 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 OR4A5Q8NH83 315 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 DUSP13Q9UII6 198 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 TRAPPC2LQ9UL33 140 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 G6PCP35575 357 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 GNG4P50150 75 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 RAB9AP51151 201 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 ZNF816Q0VGE8 651 aaPredicted RBP11.51□□□□□ -0.57
LIG1-203ENST00000536218 GUSBP1Q15486 140 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 ZNF585BQ52M93 769 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 SEM1Q6ZVN7 128 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 RAB37Q96AX2 223 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 PMCHL2Q9BQD1 86 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 PKIBQ9C010 78 aa11.51□□□□□ -0.57
LIG1-203ENST00000536218 C2orf70A6NJV1 201 aa11.5□□□□□ -0.57
LIG1-203ENST00000536218 CENPWQ5EE01 88 aa11.5□□□□□ -0.57
LIG1-203ENST00000536218 PCSK4Q6UW60 755 aa11.5□□□□□ -0.57
LIG1-203ENST00000536218 ATP6V0BQ99437 205 aa11.5□□□□□ -0.57
LIG1-203ENST00000536218 TECRQ9NZ01 308 aaKnown RBP11.5□□□□□ -0.57
LIG1-203ENST00000536218 SPTA1P02549 2419 aa11.5□□□□□ -0.57
LIG1-203ENST00000536218 FBLL1A6NHQ2 334 aaKnown RBP11.5□□□□□ -0.57
LIG1-203ENST00000536218 ZGRF1Q86YA3 2104 aa11.5□□□□□ -0.57
LIG1-203ENST00000536218 TRAV26-1A0A087WT03 109 aa11.49□□□□□ -0.57
LIG1-203ENST00000536218 PIGBOS1A0A0B4J2F0 54 aa11.49□□□□□ -0.57
LIG1-203ENST00000536218 CEACAM4O75871 244 aa11.49□□□□□ -0.57
LIG1-203ENST00000536218 PDLIM3Q53GG5 364 aaPredicted RBP11.49□□□□□ -0.57
LIG1-203ENST00000536218 Q6P435 159 aa11.49□□□□□ -0.57
LIG1-203ENST00000536218 CFAP161Q6P656 301 aa11.49□□□□□ -0.57
LIG1-203ENST00000536218 LINC00173Q6ZV60 143 aa11.49□□□□□ -0.57
LIG1-203ENST00000536218 SIGMAR1Q99720 223 aa11.49□□□□□ -0.57
LIG1-203ENST00000536218 SSBP3Q9BWW4 388 aaPredicted RBP11.49□□□□□ -0.57
LIG1-203ENST00000536218 PLSCR4Q9NRQ2 329 aa11.49□□□□□ -0.57
LIG1-203ENST00000536218 POLDIP2Q9Y2S7 368 aa11.49□□□□□ -0.57
LIG1-203ENST00000536218 IGKV3-15P01624 115 aa11.49□□□□□ -0.57
LIG1-203ENST00000536218 GPR183P32249 361 aa11.49□□□□□ -0.57
LIG1-203ENST00000536218 SSBP4Q9BWG4 385 aaPredicted RBP11.49□□□□□ -0.57
LIG1-203ENST00000536218 ZNF71Q9NQZ8 489 aaPredicted RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms