RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 UBQLN2Q9UHD9 624 aa11.53□□□□□ -0.56
CPSF1-211ENST00000533492 CTDSP2O14595 271 aa11.52□□□□□ -0.57
CPSF1-211ENST00000533492 IGKV1-5P01602 117 aa11.52□□□□□ -0.57
CPSF1-211ENST00000533492 IGHV3-48P01763 117 aa11.52□□□□□ -0.57
CPSF1-211ENST00000533492 CD74P04233 296 aa11.52□□□□□ -0.57
CPSF1-211ENST00000533492 FCGR2BP31994 310 aaPredicted RBP11.52□□□□□ -0.57
CPSF1-211ENST00000533492 SUB1P53999 127 aaKnown RBP eCLIP11.52□□□□□ -0.57
CPSF1-211ENST00000533492 MRPS10P82664 201 aaKnown RBP11.52□□□□□ -0.57
CPSF1-211ENST00000533492 SSBP1Q04837 148 aaKnown RBP11.52□□□□□ -0.57
CPSF1-211ENST00000533492 SP6Q3SY56 376 aa11.52□□□□□ -0.57
CPSF1-211ENST00000533492 CLVS1Q8IUQ0 354 aaPredicted RBP11.52□□□□□ -0.57
CPSF1-211ENST00000533492 OR13C8Q8NGS7 320 aa11.52□□□□□ -0.57
CPSF1-211ENST00000533492 MARCH1Q8TCQ1 289 aa11.52□□□□□ -0.57
CPSF1-211ENST00000533492 MIXL1Q9H2W2 232 aa11.52□□□□□ -0.57
CPSF1-211ENST00000533492 SMPXQ9UHP9 88 aa11.52□□□□□ -0.57
CPSF1-211ENST00000533492 A0A0B4J293 547 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 LCE6AA0A183 80 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 OR4C46A6NHA9 309 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 ST8SIA3O43173 380 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 CTSDP07339 412 aaPredicted RBP11.51□□□□□ -0.57
CPSF1-211ENST00000533492 NPBWR1P48145 328 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 MEF2DQ14814 521 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 SPCS2Q15005 226 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 TMEM116Q8NCL8 245 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 DUSP18Q8NEJ0 188 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 DIRAS2Q96HU8 199 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 RHPN1-AS1Q9BWJ2 59 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 NXF2Q9GZY0 626 aaKnown RBP11.51□□□□□ -0.57
CPSF1-211ENST00000533492 ENY2Q9NPA8 101 aa11.51□□□□□ -0.57
CPSF1-211ENST00000533492 C14orf166Q9Y224 244 aaKnown RBP11.51□□□□□ -0.57
CPSF1-211ENST00000533492 TRAV14DV4A0A0A6YYC5 116 aa11.5□□□□□ -0.57
CPSF1-211ENST00000533492 IGHV7-4-1A0A0J9YVY3 117 aa11.5□□□□□ -0.57
CPSF1-211ENST00000533492 DISC1C4P0D8 188 aa11.5□□□□□ -0.57
CPSF1-211ENST00000533492 B3GALNT1O75752 331 aa11.5□□□□□ -0.57
CPSF1-211ENST00000533492 ETV6P41212 452 aa11.5□□□□□ -0.57
CPSF1-211ENST00000533492 APOC4P55056 127 aa11.5□□□□□ -0.57
CPSF1-211ENST00000533492 RAB2BQ8WUD1 216 aa11.5□□□□□ -0.57
CPSF1-211ENST00000533492 IGHV3-49A0A0A0MS15 119 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 TEX13DA0A0J9YY54 714 aaPredicted RBP11.49□□□□□ -0.57
CPSF1-211ENST00000533492 CORTO00230 105 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 CHEK1O14757 476 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 P0C879 139 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 UCP1P25874 307 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 HOXA1P49639 335 aaPredicted RBP11.49□□□□□ -0.57
CPSF1-211ENST00000533492 IL18Q14116 193 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 FAAP20Q6NZ36 180 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 OR10C1Q96KK4 312 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 RNF2Q99496 336 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 OVOL2Q9BRP0 275 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 GINS3Q9BRX5 216 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 RABL2AQ9UBK7 228 aaPredicted RBP11.49□□□□□ -0.57
CPSF1-211ENST00000533492 RABL2BQ9UNT1 228 aa11.49□□□□□ -0.57
CPSF1-211ENST00000533492 INS-IGF2F8WCM5 200 aa11.48□□□□□ -0.57
CPSF1-211ENST00000533492 AKAIN1P0CW23 69 aa11.48□□□□□ -0.57
CPSF1-211ENST00000533492 BMI1P35226 326 aa11.48□□□□□ -0.57
CPSF1-211ENST00000533492 CMC4P56277 68 aaPredicted RBP11.48□□□□□ -0.57
CPSF1-211ENST00000533492 ODF3L2Q3SX64 289 aa11.48□□□□□ -0.57
CPSF1-211ENST00000533492 SMIM4Q8WVI0 70 aa11.48□□□□□ -0.57
CPSF1-211ENST00000533492 IGKV3-7A0A075B6H7 116 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 IGHV3OR16-13A0A075B7E8 117 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 IGHV3-74A0A0B4J1X5 117 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 UBE2CO00762 179 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 NOL3O60936 208 aaKnown RBP11.47□□□□□ -0.57
CPSF1-211ENST00000533492 OR5AC1P0C628 307 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 TFPI2P48307 235 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 TMBIM6P55061 237 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 PAFAH1B2P68402 229 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 SURF2Q15527 256 aaPredicted RBP11.47□□□□□ -0.57
CPSF1-211ENST00000533492 TOMM20LQ6UXN7 152 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 ZNF600Q6ZNG1 722 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 Q6ZWC4 215 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 FAM219AQ8IW50 185 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 STPG3Q8N7X2 389 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 BCL7BQ9BQE9 202 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 RTBDNQ9BSG5 229 aaPredicted RBP11.47□□□□□ -0.57
CPSF1-211ENST00000533492 C6orf62Q9GZU0 229 aaPredicted RBP11.47□□□□□ -0.57
CPSF1-211ENST00000533492 TMEM222Q9H0R3 208 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 NAA60Q9H7X0 242 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.47□□□□□ -0.57
CPSF1-211ENST00000533492 CCDC59Q9P031 241 aaKnown RBP11.47□□□□□ -0.57
CPSF1-211ENST00000533492 CSMD3Q7Z407 3707 aa11.47□□□□□ -0.57
CPSF1-211ENST00000533492 CTDSPLO15194 276 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 SPRY2O43597 315 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 CDS2O95674 445 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 TMEM50AO95807 157 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 CD5P06127 495 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 RNASE2P10153 161 aaKnown RBP11.46□□□□□ -0.57
CPSF1-211ENST00000533492 RPL35AP18077 110 aaKnown RBP11.46□□□□□ -0.57
CPSF1-211ENST00000533492 OPRK1P41145 380 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 SPCS3P61009 180 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 DHODHQ02127 395 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 OR4C16Q8NGL9 310 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 DYNC2LI1Q8TCX1 351 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 GLYATL2Q8WU03 294 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 RBPMSQ93062 196 aaKnown RBP11.46□□□□□ -0.57
CPSF1-211ENST00000533492 GALNT14Q96FL9 552 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 ZNF414Q96IQ9 312 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 PRRT1Q99946 306 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 TP53TG1Q9Y2A0 90 aa11.46□□□□□ -0.57
CPSF1-211ENST00000533492 PUS1Q9Y606 427 aaKnown RBP eCLIP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms