RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 LOC107984156A0A0G2JMH3 177 aa12.34□□□□□ -0.43
PCDHA9-202ENST00000532602 ZNF600Q6ZNG1 722 aa12.34□□□□□ -0.43
PCDHA9-202ENST00000532602 ARL17AQ8IVW1 177 aa12.34□□□□□ -0.43
PCDHA9-202ENST00000532602 PLXNA4Q9HCM2 1894 aa12.33□□□□□ -0.43
PCDHA9-202ENST00000532602 HTN3P15516 51 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 ZNF25P17030 456 aaPredicted RBP12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 LDLRAD2Q5SZI1 272 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 TMEM167AQ8TBQ9 72 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 RCC1LQ96I51 464 aaKnown RBP12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 A0A1B0GW15 77 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 TCRBV4S1A1TA0A5B7 111 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 PRR30Q53SZ7 412 aaPredicted RBP12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 FMC1Q96HJ9 113 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 C19orf67A6NJJ6 358 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 PEX7O00628 323 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 CMC4P56277 68 aaPredicted RBP12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 REC114Q7Z4M0 266 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 TMEM144Q7Z5S9 345 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 C2orf88Q9BSF0 95 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 SPTBN1Q01082 2364 aaKnown RBP12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 FHITP49789 147 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 FBLN5Q9UBX5 448 aa12.33□□□□□ -0.44
PCDHA9-202ENST00000532602 OR1P1Q8NH06 330 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 SOX21Q9Y651 276 aaPredicted RBP12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 IGHV1-46P01743 117 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 RPLP1P05386 114 aaKnown RBP12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 PRB4P10163 310 aaPredicted RBP12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 LRTM2Q8N967 370 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 PRELID3AQ96N28 172 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 DMRTA2Q96SC8 542 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 TRAV40A0A0B4J280 105 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 ZNF672Q499Z4 452 aaPredicted RBP12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 OR11H4Q8NGC9 324 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 OR10S1Q8NGN2 331 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 FAM131CQ96AQ9 280 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 MPTX1A8MV57 137 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 OR11H12B2RN74 326 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 OR9G9P0C7N8 305 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 CCL1P22362 96 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 LEPP41159 167 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 OR11H1Q8NG94 326 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 OR11H2Q8NH07 326 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 TFF3Q07654 80 aa12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 PUSL1Q8N0Z8 303 aaKnown RBP12.32□□□□□ -0.44
PCDHA9-202ENST00000532602 B4DSR2 109 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 IGFBP3P17936 291 aaPredicted RBP12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 MORN2Q502X0 79 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 ZNF506Q5JVG8 444 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 H3BRM9 83 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 RHOGP84095 191 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 TSC2P49815 1807 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 TMEM8BA6NDV4 472 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 FABP2P12104 132 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 SLC25A34Q6PIV7 304 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 ALPK2Q86TB3 2170 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 DNLZQ5SXM8 178 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 COL5A1-AS1Q5SY13 56 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 GTSCR1Q86UQ5 136 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 IGKV1-9A0A0C4DH69 117 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 A0A1B0GUT8 65 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 CGAP01215 116 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 ZNF497Q6ZNH5 498 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 OR13C6PQ8NH95 151 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 SLC25A28Q96A46 364 aa12.31□□□□□ -0.44
PCDHA9-202ENST00000532602 TRAV14DV4A0A0A6YYC5 116 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 OOSP1A8MZH6 123 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 DNAL4O96015 105 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 BMPERQ8N8U9 685 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 ASCL2Q99929 193 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 C7orf71A4D174 169 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 EGR1P18146 543 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 RTBDNQ9BSG5 229 aaPredicted RBP12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 SDK2Q58EX2 2172 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 C15orf61A6NNL5 157 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 EMP1P54849 157 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 LINC00527Q9UJ94 153 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 GBF1Q92538 1859 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 ATP5LO75964 103 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 SCGB1A1P11684 91 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 FAM166AQ6J272 317 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 GPR61Q9BZJ8 451 aa12.3□□□□□ -0.44
PCDHA9-202ENST00000532602 RNASE1P07998 156 aaKnown RBP12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 RNF125Q96EQ8 232 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 GATA2P23769 480 aaPredicted RBP12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 ST6GALNAC3Q8NDV1 305 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 OTORQ9NRC9 128 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 MSRB2Q9Y3D2 182 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 TANC1Q9C0D5 1861 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 TIMM23O14925 209 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 KLRD1Q13241 179 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 NSUN5P1Q3KNT7 163 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 SPATA45Q537H7 98 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 TMEM170BQ5T4T1 132 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 TMEM136Q6ZRR5 245 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 SELLP14151 372 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 RAMP3O60896 148 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 MDS2Q8NDY4 140 aa12.29□□□□□ -0.44
PCDHA9-202ENST00000532602 RNASE4P34096 147 aaKnown RBP12.28□□□□□ -0.44
PCDHA9-202ENST00000532602 KIAA1644Q3SXP7 199 aa12.28□□□□□ -0.44
PCDHA9-202ENST00000532602 UQCR10Q9UDW1 63 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms