RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 OR5D16Q8NGK9 328 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 OR6K6Q8NGW6 343 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 OR2T27Q8NH04 317 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 DYNLRB2Q8TF09 96 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 NARS2Q96I59 477 aaKnown RBP2.2□□□□□ -2.06
CD44-235ENST00000532339 RNF170Q96K19 258 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 HSPB9Q9BQS6 159 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 NDFIP1Q9BT67 221 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 FGF23Q9GZV9 251 aaPredicted RBP2.2□□□□□ -2.06
CD44-235ENST00000532339 TMEM133Q9H2Q1 129 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 ZNF430Q9H8G1 570 aaPredicted RBP2.2□□□□□ -2.06
CD44-235ENST00000532339 RBFOX1Q9NWB1 397 aaKnown RBP2.2□□□□□ -2.06
CD44-235ENST00000532339 GUCA1BQ9UMX6 200 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 YTHDF2Q9Y5A9 579 aaKnown RBP2.2□□□□□ -2.06
CD44-235ENST00000532339 ATP6V1DQ9Y5K8 247 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 TMEM14AQ9Y6G1 99 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 IGKV1D-17A0A075B6S4 117 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 TRAV36DV7A0A075B6V5 113 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 A0A087WTM6 91 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 IGHV3-72A0A0B4J1Y9 119 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 GMNCA6NCL1 334 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 NDUFC2-KCTD14E9PQ53 114 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 G3V318 75 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 LY6LH3BQJ8 138 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 BUB1B-PAK6H3BSN5 160 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 TNFRSF11BO00300 401 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 PLPP3O14495 311 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 TAAR5O14804 337 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 SGCEO43556 437 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 SERPINB7O75635 380 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 OR2A4O95047 310 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 IGKV1D-33P01593 117 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 IGKV1-33P01594 117 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 IGHV3-11P01762 117 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 BGNP21810 368 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 NPY1RP25929 384 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 GNRHRP30968 328 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 MAGEA6P43360 314 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 LINC00315P59091 139 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 MPV17L2Q567V2 206 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 SPANXN3Q5MJ09 141 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 KDM4DQ6B0I6 523 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 TMPRSS11AQ6ZMR5 421 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 Q6ZRN7 208 aaPredicted RBP2.19□□□□□ -2.06
CD44-235ENST00000532339 OLIG3Q7RTU3 272 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 H1FOOQ8IZA3 346 aaPredicted RBP2.19□□□□□ -2.06
CD44-235ENST00000532339 LGI3Q8N145 548 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 OR10Z1Q8NGY1 313 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 OR51A7Q8NH64 312 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 CIRBP-AS1Q8TBR5 109 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 RXFP4Q8TDU9 374 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 PPP1R14BQ96C90 147 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 CENPNQ96H22 339 aaPredicted RBP2.19□□□□□ -2.06
CD44-235ENST00000532339 ZNF714Q96N38 554 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 RDH12Q96NR8 316 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 DPY30Q9C005 99 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 ARV1Q9H2C2 271 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 WDR55Q9H6Y2 383 aaPredicted RBP2.19□□□□□ -2.06
CD44-235ENST00000532339 C8orf17Q9NRJ1 99 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 VAX2Q9UIW0 290 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 STK38LQ9Y2H1 464 aa2.19□□□□□ -2.06
CD44-235ENST00000532339 RBMX2Q9Y388 322 aaKnown RBP2.19□□□□□ -2.06
CD44-235ENST00000532339 TRAV41A0A0B4J266 112 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 LOC100506127A0A0U1RQW1 187 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 OR6C6A6NF89 314 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 CD300LBA8K4G0 201 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 BHLHE40O14503 412 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 CDIPTO14735 213 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 RBFOX2O43251 390 aaKnown RBP eCLIP2.18□□□□□ -2.06
CD44-235ENST00000532339 PTTG1O95997 202 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 TRBV12-3P01733 135 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 NEFHP12036 1026 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 PIPP12273 146 aaPredicted RBP2.18□□□□□ -2.06
CD44-235ENST00000532339 MIFP14174 115 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 HTR2CP28335 458 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 GUCA1AP43080 201 aaPredicted RBP2.18□□□□□ -2.06
CD44-235ENST00000532339 MAGEA3P43357 314 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 TAS2R31P59538 309 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 ST3GAL4Q11206 333 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 ENDOGQ14249 297 aaKnown RBP2.18□□□□□ -2.06
CD44-235ENST00000532339 SPCS2Q15005 226 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 USF2Q15853 346 aaPredicted RBP2.18□□□□□ -2.06
CD44-235ENST00000532339 HLA-DRB5Q30154 266 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 KRTAP6-3Q3LI67 103 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 Q3ZCU0 254 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 RNASE13Q5GAN3 156 aaKnown RBP2.18□□□□□ -2.06
CD44-235ENST00000532339 ZNF684Q5T5D7 378 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 TMEM236Q5W0B7 351 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 EPGNQ6UW88 154 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 Q6ZSA8 131 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 HMGN2P46Q86SG4 172 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 C10orf107Q8IVU9 208 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 C4orf33Q8N1A6 199 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 SYS1Q8N2H4 156 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 OR1M1Q8NGA1 313 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 PPCDCQ96CD2 204 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 HINT2Q9BX68 163 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 TLNRD1Q9H1K6 362 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 ATPIF1Q9UII2 106 aa2.18□□□□□ -2.06
CD44-235ENST00000532339 PYCARDQ9ULZ3 195 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms