RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 NOXA1Q86UR1 476 aa11.18□□□□□ -0.62
CPSF1-206ENST00000531480 MRPL41Q8IXM3 137 aaKnown RBP11.18□□□□□ -0.62
CPSF1-206ENST00000531480 OR1P1Q8NH06 330 aa11.18□□□□□ -0.62
CPSF1-206ENST00000531480 OR1S1Q8NH92 325 aa11.18□□□□□ -0.62
CPSF1-206ENST00000531480 ZNF355PQ9NSJ1 428 aa11.18□□□□□ -0.62
CPSF1-206ENST00000531480 HSPB7Q9UBY9 170 aa11.18□□□□□ -0.62
CPSF1-206ENST00000531480 HMSDA8MTL9 139 aa11.17□□□□□ -0.62
CPSF1-206ENST00000531480 NUDT19A8MXV4 375 aa11.17□□□□□ -0.62
CPSF1-206ENST00000531480 CCL24O00175 119 aa11.17□□□□□ -0.62
CPSF1-206ENST00000531480 RPP30P78346 268 aaKnown RBP11.17□□□□□ -0.62
CPSF1-206ENST00000531480 LINC00482Q8N8I6 264 aa11.17□□□□□ -0.62
CPSF1-206ENST00000531480 OR1L6Q8NGR2 347 aa11.17□□□□□ -0.62
CPSF1-206ENST00000531480 HINT2Q9BX68 163 aa11.17□□□□□ -0.62
CPSF1-206ENST00000531480 PLEKHA3Q9HB20 300 aa11.17□□□□□ -0.62
CPSF1-206ENST00000531480 OR2J3O76001 311 aa11.16□□□□□ -0.62
CPSF1-206ENST00000531480 NDUFB8O95169 186 aa11.16□□□□□ -0.62
CPSF1-206ENST00000531480 IFNA17P01571 189 aa11.16□□□□□ -0.62
CPSF1-206ENST00000531480 NKX2-1P43699 371 aaPredicted RBP11.16□□□□□ -0.62
CPSF1-206ENST00000531480 H2BFSP57053 126 aa11.16□□□□□ -0.62
CPSF1-206ENST00000531480 TNFRSF9Q07011 255 aa11.16□□□□□ -0.62
CPSF1-206ENST00000531480 DEFB136Q30KP8 78 aa11.16□□□□□ -0.62
CPSF1-206ENST00000531480 C15orf32Q32M92 178 aa11.16□□□□□ -0.62
CPSF1-206ENST00000531480 FAM209BQ5JX69 171 aa11.16□□□□□ -0.62
CPSF1-206ENST00000531480 ZBTB8BQ8NAP8 495 aaPredicted RBP11.16□□□□□ -0.62
CPSF1-206ENST00000531480 OR11H1Q8NG94 326 aa11.16□□□□□ -0.62
CPSF1-206ENST00000531480 PPP1R1CQ8WVI7 109 aa11.16□□□□□ -0.62
CPSF1-206ENST00000531480 CIB3Q96Q77 187 aaPredicted RBP11.16□□□□□ -0.62
CPSF1-206ENST00000531480 FBXL7Q9UJT9 491 aa11.16□□□□□ -0.62
CPSF1-206ENST00000531480 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.15□□□□□ -0.62
CPSF1-206ENST00000531480 L7N2F9 121 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 ADAP1O75689 374 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 IGHV3-11P01762 117 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 HSPB1P04792 205 aaKnown RBP11.15□□□□□ -0.62
CPSF1-206ENST00000531480 SLC25A4P12235 298 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 DEFA4P12838 97 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 VAMP2P63027 116 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 ERHP84090 104 aaKnown RBP11.15□□□□□ -0.62
CPSF1-206ENST00000531480 DEFA5Q01523 94 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 ATP5G2Q06055 141 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 ZNF616Q08AN1 781 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 VN1R17PQ8TDU5 208 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 RAB40CQ96S21 281 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 ATP6V0BQ99437 205 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 THYN1Q9P016 225 aa11.15□□□□□ -0.62
CPSF1-206ENST00000531480 A0A0D9SG52 128 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 E5RGE8 158 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 CCSO14618 274 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 CYB5BO43169 146 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 SIX6O95475 246 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 PF4P02776 101 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 OR8U8P0C7N1 319 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 RNASE2P10153 161 aaKnown RBP11.14□□□□□ -0.63
CPSF1-206ENST00000531480 SPINK9Q5DT21 86 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 C11orf87Q6NUJ2 197 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 ZNF546Q86UE3 836 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 OR1N2Q8NGR9 330 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 CXorf58Q96LI9 332 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 CCDC140Q96MF4 163 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 OR5B12Q96R08 314 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 SLC25A31Q9H0C2 315 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 ZC4H2Q9NQZ6 224 aa11.14□□□□□ -0.63
CPSF1-206ENST00000531480 IGHV4OR15-8A0A075B7B6 117 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 A0A087WW49 117 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 MPTX1A8MV57 137 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 LINC01619G3V211 115 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 K7EIM0 57 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 MPC2O95563 127 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 ATP5IP56385 69 aaPredicted RBP11.13□□□□□ -0.63
CPSF1-206ENST00000531480 S100A10P60903 97 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 ID3Q02535 119 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 EXOSC2Q13868 293 aaKnown RBP11.13□□□□□ -0.63
CPSF1-206ENST00000531480 PRSS54Q6PEW0 395 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 OR4D5Q8NGN0 318 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 ZNF502Q8TBZ5 544 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 DUX3Q96PT4 197 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 ENY2Q9NPA8 101 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 PEF1Q9UBV8 284 aaKnown RBP11.13□□□□□ -0.63
CPSF1-206ENST00000531480 NOTCH3Q9UM47 2321 aa11.13□□□□□ -0.63
CPSF1-206ENST00000531480 TRBV7-1A0A0A6YYK4 115 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 MFSD2BA6NFX1 497 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 I3L2K1 104 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 SCGB1D2O95969 90 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 FCGR2BP31994 310 aaPredicted RBP11.12□□□□□ -0.63
CPSF1-206ENST00000531480 SNCAP37840 140 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 HTR2BP41595 481 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 HOXA1P49639 335 aaPredicted RBP11.12□□□□□ -0.63
CPSF1-206ENST00000531480 TAS2R30P59541 319 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 EIF5AP63241 154 aaKnown RBP11.12□□□□□ -0.63
CPSF1-206ENST00000531480 OR2F1Q13607 317 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 C2orf83Q53S99 150 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 SLC25A24Q6NUK1 477 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 TMEM170AQ8WVE7 144 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 OR10C1Q96KK4 312 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 HIPK2Q9H2X6 1198 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 RBKSQ9H477 322 aa11.12□□□□□ -0.63
CPSF1-206ENST00000531480 FXYD6-FXYD2A0A087WZ82 144 aa11.11□□□□□ -0.63
CPSF1-206ENST00000531480 F8W735 103 aaPredicted RBP11.11□□□□□ -0.63
CPSF1-206ENST00000531480 BMPR1BO00238 502 aa11.11□□□□□ -0.63
CPSF1-206ENST00000531480 TRBV12-3P01733 135 aa11.11□□□□□ -0.63
CPSF1-206ENST00000531480 ZP3P21754 424 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms