RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 GGTLC3B5MD39 225 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 LINC00614P0C842 121 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 IER3P46695 156 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 PQLC2Q6ZP29 291 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 OR9G1Q8NH87 305 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 CBY1Q9Y3M2 126 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 FCN1O00602 326 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 OR7C2O60412 319 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 SERF1AO75920 110 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 OR5G3P0C626 314 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 RNASE2P10153 161 aaKnown RBP15.67■□□□□ 0.1
VPS28-213ENST00000530983 TPPP2P59282 170 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 SELENOVP59797 346 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 DOLPP1Q86YN1 238 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 OR8I2Q8N0Y5 310 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 OR10W1Q8NGF6 305 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 HSPB9Q9BQS6 159 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 BET1LQ9NYM9 111 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 OR10J4P0C629 311 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 PAFAH1B2P68402 229 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 BATFQ16520 125 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 C1orf185Q5T7R7 199 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 OR5B3Q8NH48 314 aa15.67■□□□□ 0.1
VPS28-213ENST00000530983 SNURFLB1AK76 121 aa15.66■□□□□ 0.1
VPS28-213ENST00000530983 FAM27E3Q08E93 113 aa15.66■□□□□ 0.1
VPS28-213ENST00000530983 TMEM30BQ3MIR4 351 aa15.66■□□□□ 0.1
VPS28-213ENST00000530983 PNKDQ8N490 385 aa15.66■□□□□ 0.1
VPS28-213ENST00000530983 ST6GALNAC3Q8NDV1 305 aa15.66■□□□□ 0.1
VPS28-213ENST00000530983 OR1L8Q8NGR8 309 aa15.66■□□□□ 0.1
VPS28-213ENST00000530983 RNASE7Q9H1E1 156 aaKnown RBP15.66■□□□□ 0.1
VPS28-213ENST00000530983 F2Z2F3 143 aa15.66■□□□□ 0.1
VPS28-213ENST00000530983 TMEM183BQ1AE95 376 aa15.66■□□□□ 0.1
VPS28-213ENST00000530983 TEX36Q5VZQ5 186 aa15.66■□□□□ 0.1
VPS28-213ENST00000530983 ZNF833PQ6ZTB9 187 aa15.66■□□□□ 0.1
VPS28-213ENST00000530983 CNOT1A5YKK6 2376 aaKnown RBP15.65■□□□□ 0.1
VPS28-213ENST00000530983 ATP5IP56385 69 aaPredicted RBP15.65■□□□□ 0.1
VPS28-213ENST00000530983 CD69Q07108 199 aa15.65■□□□□ 0.1
VPS28-213ENST00000530983 VN1R17PQ8TDU5 208 aa15.65■□□□□ 0.1
VPS28-213ENST00000530983 C19orf24Q9BVV8 132 aa15.65■□□□□ 0.1
VPS28-213ENST00000530983 RP1L1Q8IWN7 2480 aaPredicted RBP15.65■□□□□ 0.1
VPS28-213ENST00000530983 hADV38S2A0JD32 116 aa15.65■□□□□ 0.1
VPS28-213ENST00000530983 TNFSF4P23510 183 aa15.65■□□□□ 0.1
VPS28-213ENST00000530983 CD40P25942 277 aa15.65■□□□□ 0.1
VPS28-213ENST00000530983 COMPP49747 757 aaPredicted RBP15.65■□□□□ 0.1
VPS28-213ENST00000530983 SLC25A33Q9BSK2 321 aa15.65■□□□□ 0.1
VPS28-213ENST00000530983 VAMP8Q9BV40 100 aa15.65■□□□□ 0.1
VPS28-213ENST00000530983 GNB1LQ9BYB4 327 aa15.65■□□□□ 0.1
VPS28-213ENST00000530983 MRPL20Q9BYC9 149 aaKnown RBP15.65■□□□□ 0.1
VPS28-213ENST00000530983 LINC00312Q9Y6C7 94 aa15.65■□□□□ 0.1
VPS28-213ENST00000530983 MGAQ8IWI9 3026 aa15.64■□□□□ 0.09
VPS28-213ENST00000530983 IGLV2-8P01709 118 aa15.64■□□□□ 0.09
VPS28-213ENST00000530983 TAS2R45P59539 299 aa15.64■□□□□ 0.09
VPS28-213ENST00000530983 DMRTA1Q5VZB9 504 aa15.64■□□□□ 0.09
VPS28-213ENST00000530983 IGFL3Q6UXB1 125 aa15.64■□□□□ 0.09
VPS28-213ENST00000530983 TRBV9A0A0B4J1U6 114 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 RANP62826 216 aaKnown RBP15.63■□□□□ 0.09
VPS28-213ENST00000530983 SUMO1P63165 101 aaKnown RBP15.63■□□□□ 0.09
VPS28-213ENST00000530983 CX3CL1P78423 397 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 Q0VG73 95 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 FXYD3Q14802 87 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 TIGITQ495A1 244 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 MORN5Q5VZ52 161 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 OSR1Q8TAX0 266 aaPredicted RBP15.63■□□□□ 0.09
VPS28-213ENST00000530983 OSTCQ9NRP0 149 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 NDUFA4L2Q9NRX3 87 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 A0A1W2PRE2 83 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 PSMB11A5LHX3 300 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 TFPI2P48307 235 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 CCL8P80075 99 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 BAGE3Q86Y29 109 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 BAGE2Q86Y30 109 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 HARBI1Q96MB7 349 aa15.63■□□□□ 0.09
VPS28-213ENST00000530983 E7EUB6 86 aa15.62■□□□□ 0.09
VPS28-213ENST00000530983 SPINK4O60575 86 aa15.62■□□□□ 0.09
VPS28-213ENST00000530983 C8orf88P0DMB2 117 aa15.62■□□□□ 0.09
VPS28-213ENST00000530983 OR5AU1Q8NGC0 362 aa15.62■□□□□ 0.09
VPS28-213ENST00000530983 IGF2BP2-AS1Q96M15 143 aa15.62■□□□□ 0.09
VPS28-213ENST00000530983 RNF114Q9Y508 228 aa15.62■□□□□ 0.09
VPS28-213ENST00000530983 ARFGEF3Q5TH69 2177 aa15.62■□□□□ 0.09
VPS28-213ENST00000530983 H0YJW9 148 aa15.62■□□□□ 0.09
VPS28-213ENST00000530983 CHRNB4P30926 498 aa15.62■□□□□ 0.09
VPS28-213ENST00000530983 OR2T6Q8NHC8 308 aa15.62■□□□□ 0.09
VPS28-213ENST00000530983 FAM167A-AS1Q96KT0 104 aa15.62■□□□□ 0.09
VPS28-213ENST00000530983 ISLRO14498 428 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 FCN3O75636 299 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 CCL3L1P16619 93 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 CEACAM8P31997 349 aaPredicted RBP15.61■□□□□ 0.09
VPS28-213ENST00000530983 PPOXP50336 477 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 Q6ZS92 163 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 SLC25A2Q9BXI2 301 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 COMMD5Q9GZQ3 224 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 GAL3ST2Q9H3Q3 398 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 TTC28Q96AY4 2481 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 TRAV5A0A0B4J249 113 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 APOA2P02652 100 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 PCP4P48539 62 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 RPL8P62917 257 aaKnown RBP15.61■□□□□ 0.09
VPS28-213ENST00000530983 TMEM136Q6ZRR5 245 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 OR5AN1Q8NGI8 311 aa15.61■□□□□ 0.09
VPS28-213ENST00000530983 CACNG8Q8WXS5 425 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms