RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 IGKV1D-39P04432 117 aa9.63□□□□□ -0.87
CPSF1-204ENST00000529288 PI3P19957 117 aa9.63□□□□□ -0.87
CPSF1-204ENST00000529288 TMBIM6P55061 237 aa9.63□□□□□ -0.87
CPSF1-204ENST00000529288 DYNC2LI1Q8TCX1 351 aa9.63□□□□□ -0.87
CPSF1-204ENST00000529288 RAB2BQ8WUD1 216 aa9.63□□□□□ -0.87
CPSF1-204ENST00000529288 GALNT14Q96FL9 552 aa9.63□□□□□ -0.87
CPSF1-204ENST00000529288 SEC22AQ96IW7 307 aa9.63□□□□□ -0.87
CPSF1-204ENST00000529288 ATP6V0BQ99437 205 aa9.63□□□□□ -0.87
CPSF1-204ENST00000529288 SCPEP1Q9HB40 452 aa9.63□□□□□ -0.87
CPSF1-204ENST00000529288 TP53TG1Q9Y2A0 90 aa9.63□□□□□ -0.87
CPSF1-204ENST00000529288 ALMS1Q8TCU4 4167 aa9.63□□□□□ -0.87
CPSF1-204ENST00000529288 TRAV14DV4A0A0A6YYC5 116 aa9.62□□□□□ -0.87
CPSF1-204ENST00000529288 IGHV3-66A0A0C4DH42 116 aa9.62□□□□□ -0.87
CPSF1-204ENST00000529288 I3L2K1 104 aa9.62□□□□□ -0.87
CPSF1-204ENST00000529288 FCGR2BP31994 310 aaPredicted RBP9.62□□□□□ -0.87
CPSF1-204ENST00000529288 HSPE1P61604 102 aaKnown RBP9.62□□□□□ -0.87
CPSF1-204ENST00000529288 PRCDQ00LT1 54 aa9.62□□□□□ -0.87
CPSF1-204ENST00000529288 CADM3Q8N126 398 aa9.62□□□□□ -0.87
CPSF1-204ENST00000529288 LINC00476Q8WZB0 136 aa9.62□□□□□ -0.87
CPSF1-204ENST00000529288 RNF183Q96D59 192 aa9.62□□□□□ -0.87
CPSF1-204ENST00000529288 BCL7BQ9BQE9 202 aa9.62□□□□□ -0.87
CPSF1-204ENST00000529288 KIR2DL5BA0A0G2JN68 375 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 KIR2DL5BA0A0G2JPC4 375 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 NUPR2A6NF83 97 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 H3BMQ9 156 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 IFNA17P01571 189 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 SNCAP37840 140 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 AKR1C2P52895 323 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 UCP3P55916 312 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 RPL11P62913 178 aaKnown RBP9.61□□□□□ -0.87
CPSF1-204ENST00000529288 TNFRSF9Q07011 255 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 MZT2AQ6P582 158 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 CEMP1Q6PRD7 247 aaPredicted RBP9.61□□□□□ -0.87
CPSF1-204ENST00000529288 TCF24Q7RTU0 167 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 KIR2DL5AQ8N109 375 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 SLC35G3Q8N808 338 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 KIR2DL5BQ8NHK3 375 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 AP3S1Q92572 193 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 TXN2Q99757 166 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 PDCD10Q9BUL8 212 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 NXF2Q9GZY0 626 aaKnown RBP9.61□□□□□ -0.87
CPSF1-204ENST00000529288 MAP6D1Q9H9H5 199 aa9.61□□□□□ -0.87
CPSF1-204ENST00000529288 FAM212BQ9NTI7 297 aaPredicted RBP9.61□□□□□ -0.87
CPSF1-204ENST00000529288 CCDC59Q9P031 241 aaKnown RBP9.61□□□□□ -0.87
CPSF1-204ENST00000529288 DNASE2O00115 360 aaPredicted RBP9.6□□□□□ -0.87
CPSF1-204ENST00000529288 CTDSP2O14595 271 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 ST8SIA3O43173 380 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 PPP5CP53041 499 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 CMC4P56277 68 aaPredicted RBP9.6□□□□□ -0.87
CPSF1-204ENST00000529288 PIGPP57054 158 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 PAFAH1B2P68402 229 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 TRIM16LQ309B1 348 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 RNASE10Q5GAN6 216 aaKnown RBP9.6□□□□□ -0.87
CPSF1-204ENST00000529288 TOMM20LQ6UXN7 152 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 TMEM217Q8N7C4 229 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 DUSP18Q8NEJ0 188 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 RNASE11Q8TAA1 199 aaKnown RBP9.6□□□□□ -0.87
CPSF1-204ENST00000529288 ABHD1Q96SE0 405 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 GINS3Q9BRX5 216 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 RBM38Q9H0Z9 239 aaKnown RBP9.6□□□□□ -0.87
CPSF1-204ENST00000529288 CSTL1Q9H114 145 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 KLK11Q9UBX7 282 aa9.6□□□□□ -0.87
CPSF1-204ENST00000529288 KLK5Q9Y337 293 aaPredicted RBP9.6□□□□□ -0.87
CPSF1-204ENST00000529288 MPTX1A8MV57 137 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 IGKV1-5P01602 117 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 APOHP02749 345 aaPredicted RBP9.59□□□□□ -0.87
CPSF1-204ENST00000529288 CD3DP04234 171 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 ETV6P41212 452 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 NPBWR1P48145 328 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 HOXA1P49639 335 aaPredicted RBP9.59□□□□□ -0.87
CPSF1-204ENST00000529288 SP6Q3SY56 376 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 SCGB2B2Q4G0G5 96 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 OR52I2Q8NH67 350 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 ST8SIA2Q92186 375 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 ZNF414Q96IQ9 312 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 TP53RKQ96S44 253 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 SLIRPQ9GZT3 109 aaKnown RBP9.59□□□□□ -0.87
CPSF1-204ENST00000529288 ENY2Q9NPA8 101 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 EXTL2Q9UBQ6 330 aa9.59□□□□□ -0.87
CPSF1-204ENST00000529288 C3orf85A0A1B0GTC6 90 aa9.58□□□□□ -0.88
CPSF1-204ENST00000529288 ATG12O94817 140 aa9.58□□□□□ -0.88
CPSF1-204ENST00000529288 SUB1P53999 127 aaKnown RBP eCLIP9.58□□□□□ -0.88
CPSF1-204ENST00000529288 LEMD1Q68G75 181 aa9.58□□□□□ -0.88
CPSF1-204ENST00000529288 ZNF114Q8NC26 417 aa9.58□□□□□ -0.88
CPSF1-204ENST00000529288 OR10C1Q96KK4 312 aa9.58□□□□□ -0.88
CPSF1-204ENST00000529288 RARRES2Q99969 163 aa9.58□□□□□ -0.88
CPSF1-204ENST00000529288 COPZ2Q9P299 210 aa9.58□□□□□ -0.88
CPSF1-204ENST00000529288 RABAC1Q9UI14 185 aa9.58□□□□□ -0.88
CPSF1-204ENST00000529288 PUS1Q9Y606 427 aaKnown RBP eCLIP9.58□□□□□ -0.88
CPSF1-204ENST00000529288 A0A0B4J293 547 aa9.57□□□□□ -0.88
CPSF1-204ENST00000529288 DFFBO76075 338 aa9.57□□□□□ -0.88
CPSF1-204ENST00000529288 TMEM50AO95807 157 aa9.57□□□□□ -0.88
CPSF1-204ENST00000529288 DEFB131AP59861 70 aa9.57□□□□□ -0.88
CPSF1-204ENST00000529288 RND3P61587 244 aa9.57□□□□□ -0.88
CPSF1-204ENST00000529288 FAM90A2PQ658T7 463 aa9.57□□□□□ -0.88
CPSF1-204ENST00000529288 ZNF600Q6ZNG1 722 aa9.57□□□□□ -0.88
CPSF1-204ENST00000529288 LILRB2Q8N423 598 aa9.57□□□□□ -0.88
CPSF1-204ENST00000529288 CCDC71LQ8N9Z2 235 aa9.57□□□□□ -0.88
CPSF1-204ENST00000529288 OR11H2Q8NH07 326 aa9.57□□□□□ -0.88
CPSF1-204ENST00000529288 PHLDA1Q8WV24 401 aaPredicted RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms