RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 DEFA5Q01523 94 aa16.02■□□□□ 0.16
CD44-222ENST00000526025 OXA1LQ15070 435 aa16.02■□□□□ 0.16
CD44-222ENST00000526025 DEFB136Q30KP8 78 aa16.02■□□□□ 0.16
CD44-222ENST00000526025 ZBTB8BQ8NAP8 495 aaPredicted RBP16.02■□□□□ 0.16
CD44-222ENST00000526025 UXS1Q8NBZ7 420 aa16.02■□□□□ 0.16
CD44-222ENST00000526025 SLC24A4Q8NFF2 622 aa16.02■□□□□ 0.16
CD44-222ENST00000526025 OR1N2Q8NGR9 330 aa16.02■□□□□ 0.16
CD44-222ENST00000526025 OR5B12Q96R08 314 aa16.02■□□□□ 0.16
CD44-222ENST00000526025 RANGRFQ9HD47 186 aaPredicted RBP16.02■□□□□ 0.16
CD44-222ENST00000526025 PEF1Q9UBV8 284 aaKnown RBP16.02■□□□□ 0.16
CD44-222ENST00000526025 LINC01619G3V211 115 aa16.01■□□□□ 0.15
CD44-222ENST00000526025 SYNGR2O43760 224 aa16.01■□□□□ 0.15
CD44-222ENST00000526025 NKX2-1P43699 371 aaPredicted RBP16.01■□□□□ 0.15
CD44-222ENST00000526025 TATDN3Q17R31 274 aa16.01■□□□□ 0.15
CD44-222ENST00000526025 TREML4Q6UXN2 200 aa16.01■□□□□ 0.15
CD44-222ENST00000526025 LINC00482Q8N8I6 264 aa16.01■□□□□ 0.15
CD44-222ENST00000526025 WFDC9Q8NEX5 89 aa16.01■□□□□ 0.15
CD44-222ENST00000526025 ZNF502Q8TBZ5 544 aa16.01■□□□□ 0.15
CD44-222ENST00000526025 DPF1Q92782 380 aa16.01■□□□□ 0.15
CD44-222ENST00000526025 MGAM2Q2M2H8 2515 aa16.01■□□□□ 0.15
CD44-222ENST00000526025 K7EIM0 57 aa16■□□□□ 0.15
CD44-222ENST00000526025 NXPH3O95157 252 aa16■□□□□ 0.15
CD44-222ENST00000526025 ZP3P21754 424 aa16■□□□□ 0.15
CD44-222ENST00000526025 FCGR2BP31994 310 aaPredicted RBP16■□□□□ 0.15
CD44-222ENST00000526025 GSG1LQ6UXU4 331 aa16■□□□□ 0.15
CD44-222ENST00000526025 C2orf50Q96LR7 162 aa16■□□□□ 0.15
CD44-222ENST00000526025 CCDC140Q96MF4 163 aa16■□□□□ 0.15
CD44-222ENST00000526025 MFSD2BA6NFX1 497 aa15.99■□□□□ 0.15
CD44-222ENST00000526025 I3L2K1 104 aa15.99■□□□□ 0.15
CD44-222ENST00000526025 CCSO14618 274 aa15.99■□□□□ 0.15
CD44-222ENST00000526025 NPY1RP25929 384 aa15.99■□□□□ 0.15
CD44-222ENST00000526025 RNASEH2CQ8TDP1 164 aaKnown RBP15.99■□□□□ 0.15
CD44-222ENST00000526025 SCARB1Q8WTV0 552 aa15.99■□□□□ 0.15
CD44-222ENST00000526025 IGHV4OR15-8A0A075B7B6 117 aa15.98■□□□□ 0.15
CD44-222ENST00000526025 A0A087WW49 117 aa15.98■□□□□ 0.15
CD44-222ENST00000526025 C5orf51A6NDU8 294 aa15.98■□□□□ 0.15
CD44-222ENST00000526025 MISP3Q96FF7 219 aa15.98■□□□□ 0.15
CD44-222ENST00000526025 TXN2Q99757 166 aa15.98■□□□□ 0.15
CD44-222ENST00000526025 GAR1Q9NY12 217 aaKnown RBP15.98■□□□□ 0.15
CD44-222ENST00000526025 C21orf62Q9NYP8 219 aa15.98■□□□□ 0.15
CD44-222ENST00000526025 FAM25EA8MYX2 175 aa15.97■□□□□ 0.15
CD44-222ENST00000526025 WRBO00258 174 aa15.97■□□□□ 0.15
CD44-222ENST00000526025 MT-CO2P00403 227 aa15.97■□□□□ 0.15
CD44-222ENST00000526025 IFNA10P01566 189 aa15.97■□□□□ 0.15
CD44-222ENST00000526025 RPP30P78346 268 aaKnown RBP15.97■□□□□ 0.15
CD44-222ENST00000526025 TMEM170AQ8WVE7 144 aa15.97■□□□□ 0.15
CD44-222ENST00000526025 DUX3Q96PT4 197 aa15.97■□□□□ 0.15
CD44-222ENST00000526025 RAB40CQ96S21 281 aa15.97■□□□□ 0.15
CD44-222ENST00000526025 MAGT1Q9H0U3 335 aa15.97■□□□□ 0.15
CD44-222ENST00000526025 GSKIPQ9P0R6 139 aa15.97■□□□□ 0.15
CD44-222ENST00000526025 ALG5Q9Y673 324 aa15.97■□□□□ 0.15
CD44-222ENST00000526025 NOTCH3Q9UM47 2321 aa15.96■□□□□ 0.15
CD44-222ENST00000526025 RPS10-NUDT3A0A1W2PQS6 291 aa15.96■□□□□ 0.15
CD44-222ENST00000526025 ANKRD34BA5PLL1 514 aa15.96■□□□□ 0.15
CD44-222ENST00000526025 SSNA1O43805 119 aa15.96■□□□□ 0.15
CD44-222ENST00000526025 TRBV12-3P01733 135 aa15.96■□□□□ 0.15
CD44-222ENST00000526025 IL15RAQ13261 267 aa15.96■□□□□ 0.15
CD44-222ENST00000526025 BMPR1BO00238 502 aa15.95■□□□□ 0.14
CD44-222ENST00000526025 GOSR2O14653 212 aa15.95■□□□□ 0.14
CD44-222ENST00000526025 GGCTO75223 188 aaKnown RBP15.95■□□□□ 0.14
CD44-222ENST00000526025 MBPP02686 304 aaPredicted RBP15.95■□□□□ 0.14
CD44-222ENST00000526025 IAPPP10997 89 aa15.95■□□□□ 0.14
CD44-222ENST00000526025 HOXD3P31249 432 aaPredicted RBP15.95■□□□□ 0.14
CD44-222ENST00000526025 MFAP4P55083 255 aa15.95■□□□□ 0.14
CD44-222ENST00000526025 TAS2R30P59541 319 aa15.95■□□□□ 0.14
CD44-222ENST00000526025 POLR2GP62487 172 aaKnown RBP eCLIP15.95■□□□□ 0.14
CD44-222ENST00000526025 SPSB3Q6PJ21 355 aa15.95■□□□□ 0.14
CD44-222ENST00000526025 CLEC19AQ6UXS0 136 aa15.95■□□□□ 0.14
CD44-222ENST00000526025 BSCL2Q96G97 398 aaPredicted RBP15.95■□□□□ 0.14
CD44-222ENST00000526025 SMIM8Q96KF7 97 aa15.95■□□□□ 0.14
CD44-222ENST00000526025 RCL1Q9Y2P8 373 aaKnown RBP15.95■□□□□ 0.14
CD44-222ENST00000526025 F8W735 103 aaPredicted RBP15.94■□□□□ 0.14
CD44-222ENST00000526025 CLEC3BP05452 202 aa15.94■□□□□ 0.14
CD44-222ENST00000526025 CD33P20138 364 aa15.94■□□□□ 0.14
CD44-222ENST00000526025 ARL3P36405 182 aa15.94■□□□□ 0.14
CD44-222ENST00000526025 CYCSP99999 105 aaKnown RBP15.94■□□□□ 0.14
CD44-222ENST00000526025 RPEL1Q2QD12 228 aa15.94■□□□□ 0.14
CD44-222ENST00000526025 ETFRF1Q6IPR1 90 aa15.94■□□□□ 0.14
CD44-222ENST00000526025 C11orf87Q6NUJ2 197 aa15.94■□□□□ 0.14
CD44-222ENST00000526025 PINX1Q96BK5 328 aaKnown RBP15.94■□□□□ 0.14
CD44-222ENST00000526025 RCC1LQ96I51 464 aaKnown RBP15.94■□□□□ 0.14
CD44-222ENST00000526025 MCRIP2Q9BUT9 160 aaKnown RBP15.94■□□□□ 0.14
CD44-222ENST00000526025 NMES1Q9C002 83 aa15.94■□□□□ 0.14
CD44-222ENST00000526025 C15orf62A8K5M9 175 aa15.93■□□□□ 0.14
CD44-222ENST00000526025 IGHV3-23P01764 117 aa15.93■□□□□ 0.14
CD44-222ENST00000526025 SLC25A4P12235 298 aa15.93■□□□□ 0.14
CD44-222ENST00000526025 OPRK1P41145 380 aa15.93■□□□□ 0.14
CD44-222ENST00000526025 SLURP1P55000 103 aa15.93■□□□□ 0.14
CD44-222ENST00000526025 RAB11AP62491 216 aa15.93■□□□□ 0.14
CD44-222ENST00000526025 KLF5Q13887 457 aaPredicted RBP15.93■□□□□ 0.14
CD44-222ENST00000526025 FNDC4Q9H6D8 234 aaPredicted RBP15.93■□□□□ 0.14
CD44-222ENST00000526025 S4R3C0 116 aa15.93■□□□□ 0.14
CD44-222ENST00000526025 K7EPK0 472 aa15.92■□□□□ 0.14
CD44-222ENST00000526025 TGOLN2O43493 480 aa15.92■□□□□ 0.14
CD44-222ENST00000526025 SSSCA1O60232 199 aa15.92■□□□□ 0.14
CD44-222ENST00000526025 TSC22D2O75157 780 aa15.92■□□□□ 0.14
CD44-222ENST00000526025 SCGB1D2O95969 90 aa15.92■□□□□ 0.14
CD44-222ENST00000526025 GPR183P32249 361 aa15.92■□□□□ 0.14
CD44-222ENST00000526025 GPX4P36969 197 aaPredicted RBP15.92■□□□□ 0.14
CD44-222ENST00000526025 NPBWR1P48145 328 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms