RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 IGHV1-8P0DP01 117 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 DEFA4P12838 97 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 PRRX1P54821 245 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 LYPD2Q6UXB3 125 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 SLC16A13Q7RTY0 426 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 ST6GALNAC6Q969X2 333 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 TMEM133Q9H2Q1 129 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 CTSZQ9UBR2 303 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 PITPNC1Q9UKF7 332 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 DOPEY2Q9Y3R5 2298 aa9.73□□□□□ -0.85
NUP54-202ENST00000502850 RP1L1Q8IWN7 2480 aaPredicted RBP9.72□□□□□ -0.85
NUP54-202ENST00000502850 OR5G3P0C626 314 aa9.72□□□□□ -0.85
NUP54-202ENST00000502850 LINC00869P0C866 280 aa9.72□□□□□ -0.85
NUP54-202ENST00000502850 PPOXP50336 477 aa9.72□□□□□ -0.85
NUP54-202ENST00000502850 FAM78BQ5VT40 261 aa9.72□□□□□ -0.85
NUP54-202ENST00000502850 ETFRF1Q6IPR1 90 aa9.72□□□□□ -0.85
NUP54-202ENST00000502850 ST6GALNAC3Q8NDV1 305 aa9.72□□□□□ -0.85
NUP54-202ENST00000502850 PFDN5Q99471 154 aa9.72□□□□□ -0.85
NUP54-202ENST00000502850 AMMECR1Q9Y4X0 333 aaPredicted RBP9.72□□□□□ -0.85
NUP54-202ENST00000502850 TRAV9-1A0A075B6T8 112 aa9.71□□□□□ -0.85
NUP54-202ENST00000502850 NPPCP23582 126 aa9.71□□□□□ -0.85
NUP54-202ENST00000502850 SELENOTP62341 195 aa9.71□□□□□ -0.85
NUP54-202ENST00000502850 GAMTQ14353 236 aa9.71□□□□□ -0.85
NUP54-202ENST00000502850 TEX45Q8NA69 505 aa9.71□□□□□ -0.85
NUP54-202ENST00000502850 OR4P4Q8NGL7 312 aa9.71□□□□□ -0.85
NUP54-202ENST00000502850 OR1L4Q8NGR5 311 aa9.71□□□□□ -0.85
NUP54-202ENST00000502850 FRZBQ92765 325 aa9.71□□□□□ -0.85
NUP54-202ENST00000502850 ACY3Q96HD9 319 aa9.71□□□□□ -0.85
NUP54-202ENST00000502850 SEPSECSQ9HD40 501 aaKnown RBP9.71□□□□□ -0.85
NUP54-202ENST00000502850 UBR5O95071 2799 aaPredicted RBP9.71□□□□□ -0.86
NUP54-202ENST00000502850 BSNQ9UPA5 3926 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 A0A1W2PPQ1 181 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 FCN3O75636 299 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 MYOD1P15172 320 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 OR10J1P30954 320 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 BPIFB3P59826 476 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 FOXL1Q12952 345 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 DNLZQ5SXM8 178 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 MMD2Q8IY49 270 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 MUC15Q8N387 334 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 NECAP1Q8NC96 275 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 BEND2Q8NDZ0 799 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 C22orf15Q8WYQ4 148 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 SFRP2Q96HF1 295 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 ZNRD1Q9P1U0 126 aa9.71□□□□□ -0.86
NUP54-202ENST00000502850 SCO2A0A1W2PP80 73 aa9.7□□□□□ -0.86
NUP54-202ENST00000502850 CORTO00230 105 aa9.7□□□□□ -0.86
NUP54-202ENST00000502850 PHOX2AO14813 284 aa9.7□□□□□ -0.86
NUP54-202ENST00000502850 REG1BP48304 166 aa9.7□□□□□ -0.86
NUP54-202ENST00000502850 COMPP49747 757 aaPredicted RBP9.7□□□□□ -0.86
NUP54-202ENST00000502850 RPL19P84098 196 aaKnown RBP9.7□□□□□ -0.86
NUP54-202ENST00000502850 HIST3H2BBQ8N257 126 aa9.7□□□□□ -0.86
NUP54-202ENST00000502850 OR51M1Q9H341 326 aa9.7□□□□□ -0.86
NUP54-202ENST00000502850 ZNF430Q9H8G1 570 aaPredicted RBP9.7□□□□□ -0.86
NUP54-202ENST00000502850 NIT2Q9NQR4 276 aa9.7□□□□□ -0.86
NUP54-202ENST00000502850 YTHDF2Q9Y5A9 579 aaKnown RBP9.7□□□□□ -0.86
NUP54-202ENST00000502850 ICE1Q9Y2F5 2266 aa9.7□□□□□ -0.86
NUP54-202ENST00000502850 FAM90A27PA6NNH2 459 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 ACTL6BO94805 426 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 IGLV2-23P01705 113 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 C8orf88P0DMB2 117 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 PSG5Q15238 335 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 ZNF672Q499Z4 452 aaPredicted RBP9.69□□□□□ -0.86
NUP54-202ENST00000502850 ACTL10Q5JWF8 245 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 SPATA31B1PQ5VZV4 182 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 MIR17HGQ75NE6 70 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 TMEM183AQ8IXX5 376 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 ZNF114Q8NC26 417 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 OR8B3Q8NGG8 313 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 OR4X1Q8NH49 305 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 C8orf46Q8TAG6 207 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 OR8B2Q96RD0 313 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 CLEC7AQ9BXN2 247 aa9.69□□□□□ -0.86
NUP54-202ENST00000502850 SPENQ96T58 3664 aaKnown RBP9.69□□□□□ -0.86
NUP54-202ENST00000502850 IGHV2-26A0A0B4J1V2 119 aa9.68□□□□□ -0.86
NUP54-202ENST00000502850 A0A1W2PRE2 83 aa9.68□□□□□ -0.86
NUP54-202ENST00000502850 CCL21O00585 134 aa9.68□□□□□ -0.86
NUP54-202ENST00000502850 OR7C2O60412 319 aa9.68□□□□□ -0.86
NUP54-202ENST00000502850 IGHV2-70P01814 119 aa9.68□□□□□ -0.86
NUP54-202ENST00000502850 COA6Q5JTJ3 125 aaKnown RBP9.68□□□□□ -0.86
NUP54-202ENST00000502850 THAP8Q8NA92 274 aa9.68□□□□□ -0.86
NUP54-202ENST00000502850 OR10W1Q8NGF6 305 aa9.68□□□□□ -0.86
NUP54-202ENST00000502850 OR10G8Q8NGN5 311 aa9.68□□□□□ -0.86
NUP54-202ENST00000502850 RNF5Q99942 180 aa9.68□□□□□ -0.86
NUP54-202ENST00000502850 RAB1BQ9H0U4 201 aa9.68□□□□□ -0.86
NUP54-202ENST00000502850 MIOXQ9UGB7 285 aa9.68□□□□□ -0.86
NUP54-202ENST00000502850 TCRBV4S1A1TA0A5B7 111 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 SLC25A17O43808 307 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 COX7A2P2O60397 106 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 FABP1P07148 127 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 PAX2Q02962 417 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 SRSF1Q07955 248 aaKnown RBP eCLIP9.67□□□□□ -0.867e-7■□□□□ 8.2
NUP54-202ENST00000502850 STXBP6Q8NFX7 210 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 OR5T1Q8NG75 326 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 TIMD4Q96H15 378 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 DERL1Q9BUN8 251 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 ELOVL1Q9BW60 279 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 DNAJC4Q9NNZ3 241 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 ARFGEF3Q5TH69 2177 aa9.67□□□□□ -0.86
NUP54-202ENST00000502850 IGKV1OR2-108A0A075B7D4 117 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms