RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GATA4P43694 442 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 ZNF788Q6ZQV5 615 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 Q6ZVH6 145 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 NEUROG1Q92886 237 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 RCHY1Q96PM5 261 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 IDI2-AS1Q9NZ38 188 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 RPH3ALQ9UNE2 315 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 STAG3L2P0CL84 134 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 STAG3L3P0CL85 134 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 ADIPOQQ15848 244 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 CENPWQ5EE01 88 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 PRR27Q6MZM9 219 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 CCL17Q92583 94 aa13.48□□□□□ -0.25
CCDC88B-210ENST00000494566 M0R143 59 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 TNFSF4P23510 183 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 RAB7AP51149 207 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 SUMO1P63165 101 aaKnown RBP13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 TMEM108Q6UXF1 575 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 MMD2Q8IY49 270 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 C16orf97H3BN30 126 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 PRRG2O14669 202 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 CXorf1O96002 111 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 THBDP07204 575 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 NPSP0C0P6 89 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 NPY1RP25929 384 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 ZNF439Q8NDP4 499 aa13.47□□□□□ -0.25
CCDC88B-210ENST00000494566 CT45A6P0DMU7 189 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 CT45A5P0DMU8 189 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 CT45A7P0DMV0 189 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 DLX1P56177 255 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 LGALS4P56470 323 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 DIAPH2-AS1Q14236 149 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 MAJINQ3KP22 176 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 MORN5Q5VZ52 161 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 Q8NA96 180 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 SLC24A4Q8NFF2 622 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 OR9G1Q8NH87 305 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 H1FXQ92522 213 aaKnown RBP13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 ENY2Q9NPA8 101 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 H3BTX0 84 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 TYMSP04818 313 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 CD24P25063 80 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 AARDQ4LEZ3 155 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 GFRALQ6UXV0 394 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 TMEM106BQ9NUM4 274 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 TP73-AS1Q9UF72 201 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 OR51B2Q9Y5P1 312 aa13.46□□□□□ -0.25
CCDC88B-210ENST00000494566 OR10J1P30954 320 aa13.46□□□□□ -0.26
CCDC88B-210ENST00000494566 LYPD2Q6UXB3 125 aa13.46□□□□□ -0.26
CCDC88B-210ENST00000494566 GNB4Q9HAV0 340 aa13.46□□□□□ -0.26
CCDC88B-210ENST00000494566 IGHV3-21A0A0B4J1V1 117 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 FOXC1Q12948 553 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 TEPPQ6URK8 271 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 NEU1Q99519 415 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 PLEKHA3Q9HB20 300 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 SLC35D1Q9NTN3 355 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 SLC25A10Q9UBX3 287 aaPredicted RBP13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 FBXL7Q9UJT9 491 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 TIMM8BQ9Y5J9 83 aaPredicted RBP13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 PAX1P15863 534 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 OPRK1P41145 380 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 GNG4P50150 75 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 TDGF1P3P51864 188 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 HSPE1P61604 102 aaKnown RBP13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 RPP30P78346 268 aaKnown RBP13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 LCN2P80188 198 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 C1orf194Q5T5A4 169 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 ERASQ7Z444 233 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 FAM168AQ92567 244 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 DIRC2Q96SL1 478 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 NPVFQ9HCQ7 196 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 TMEM14BQ9NUH8 114 aa13.45□□□□□ -0.26
CCDC88B-210ENST00000494566 IGKV1OR2-108A0A075B7D4 117 aa13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 AMTP48728 403 aa13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 SSBP2P81877 361 aaPredicted RBP13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 LCN12Q6JVE5 192 aa13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 OR52E5Q8NH55 327 aa13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 EAF1Q96JC9 268 aaPredicted RBP13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 RPUSD1Q9UJJ7 312 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 C17orf100A8MU93 164 aa13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 GPR6P46095 362 aaPredicted RBP13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 OR5AU1Q8NGC0 362 aa13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 VAMP8Q9BV40 100 aa13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 MRPL20Q9BYC9 149 aaKnown RBP13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 SAP30LQ9HAJ7 183 aa13.44□□□□□ -0.26
CCDC88B-210ENST00000494566 HELTA6NFD8 242 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 FAM90A9PA6NNJ1 464 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 J3QR06 171 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 TOX4O94842 621 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 KIR2DS2P43631 304 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 TPPP2P59282 170 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 OR2T6Q8NHC8 308 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 FOXL1Q12952 345 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 C10orf55Q5SWW7 151 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 NABP2Q9BQ15 211 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 IL36BQ9NZH7 164 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 REG1AP05451 166 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 SAA1P0DJI8 122 aaPredicted RBP13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 PYYP10082 97 aa13.43□□□□□ -0.26
CCDC88B-210ENST00000494566 SRIP30626 198 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms