RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 CGB3P0DN86 165 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 TCF23Q7RTU1 214 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 A0A0G2JK05 382 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 GNG5P63218 68 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 C2orf68Q2NKX9 166 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 CIARTQ8N365 385 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-212ENST00000491769 RNF125Q96EQ8 232 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 SPAG8Q99932 426 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-212ENST00000491769 SEPSECSQ9HD40 501 aaKnown RBP10.98□□□□□ -0.65
COL6A3-212ENST00000491769 UQCR10Q9UDW1 63 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 IGHV4-39P01824 125 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 UCP3P55916 312 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 TMEM86BQ8N661 226 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 ZNF837Q96EG3 531 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-212ENST00000491769 UBE2E2Q96LR5 201 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 IMMP1LQ96LU5 166 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 C1QTNF5Q9BXJ0 243 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 KIAA1217Q5T5P2 1943 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 FABP5P3A8MUU1 101 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 PMCHL2Q9BQD1 86 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 SLC25A15Q9Y619 301 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 IGHV3-64A0A075B6Q5 118 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 TRBV9A0A0B4J1U6 114 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 SCO2A0A1W2PP80 73 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 CBLN1P23435 193 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 ACTL10Q5JWF8 245 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 JPT2Q9H910 190 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 A0A1B0GV72 72 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 CEACAM8P31997 349 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-212ENST00000491769 RNF223E7ERA6 249 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 SLC17A3O00476 420 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 TTC9CQ8N5M4 171 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 ASCL2Q99929 193 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 MYO5AQ9Y4I1 1855 aaKnown RBP10.97□□□□□ -0.65
COL6A3-212ENST00000491769 SIGLEC5O15389 551 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 GATA4P43694 442 aa10.97□□□□□ -0.65
COL6A3-212ENST00000491769 FAM110DQ8TAY7 271 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-212ENST00000491769 RGPD3A6NKT7 1758 aaPredicted RBP10.96□□□□□ -0.65
COL6A3-212ENST00000491769 VENTXO95231 258 aa10.96□□□□□ -0.65
COL6A3-212ENST00000491769 FOXF2Q12947 444 aa10.96□□□□□ -0.65
COL6A3-212ENST00000491769 PVRIGQ6DKI7 326 aa10.96□□□□□ -0.65
COL6A3-212ENST00000491769 IGKV1D-43A0A0B4J1Z2 117 aa10.96□□□□□ -0.65
COL6A3-212ENST00000491769 OTORQ9NRC9 128 aa10.96□□□□□ -0.65
COL6A3-212ENST00000491769 DOCK5Q9H7D0 1870 aa10.96□□□□□ -0.65
COL6A3-212ENST00000491769 POLR2AP24928 1970 aaKnown RBP10.96□□□□□ -0.65
COL6A3-212ENST00000491769 ZNF250P15622 560 aa10.96□□□□□ -0.65
COL6A3-212ENST00000491769 LINC01356Q8N9X3 169 aa10.96□□□□□ -0.65
COL6A3-212ENST00000491769 F8WEM9 126 aa10.96□□□□□ -0.66
COL6A3-212ENST00000491769 RNF182Q8N6D2 247 aa10.96□□□□□ -0.66
COL6A3-212ENST00000491769 UPK2O00526 184 aa10.96□□□□□ -0.66
COL6A3-212ENST00000491769 PAX2Q02962 417 aa10.96□□□□□ -0.66
COL6A3-212ENST00000491769 RNF166Q96A37 237 aaPredicted RBP10.96□□□□□ -0.66
COL6A3-212ENST00000491769 NUP214P35658 2090 aaPredicted RBP10.96□□□□□ -0.66
COL6A3-212ENST00000491769 EREGO14944 169 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 IGHV1-46P01743 117 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 IFI6P09912 130 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 MRPL14Q6P1L8 145 aaKnown RBP10.95□□□□□ -0.66
COL6A3-212ENST00000491769 TMEM14DPA8MWL7 114 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 PIP4P2Q8N4L2 257 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 MAPK1IP1LQ8NDC0 245 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 PLPPR1Q8TBJ4 325 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 SMIM6P0DI80 62 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 CGB7P0DN87 165 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 DEFB104AQ8WTQ1 72 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 SLC25A38Q96DW6 304 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 CD300CQ08708 224 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 GGACTQ9BVM4 153 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 MRPS18CQ9Y3D5 142 aaKnown RBP10.95□□□□□ -0.66
COL6A3-212ENST00000491769 C21orf62-AS1Q17RA5 79 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 LURAP1LQ8IV03 231 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 ORMDL3Q8N138 153 aa10.95□□□□□ -0.66
COL6A3-212ENST00000491769 PINLYPA6NC86 204 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 J3QKU1 62 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 OR5A1Q8NGJ0 315 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 EVI2AP22794 236 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 ZNF329Q86UD4 541 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 SDHCQ99643 169 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-212ENST00000491769 DEPPQ9NTK1 212 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 TRAV2A0A0B4J234 112 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 PIN1P1O15428 100 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 CACNG8Q8WXS5 425 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 OVOL1O14753 267 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 Q5PR19 223 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 LHFPL4Q7Z7J7 247 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 TYMSP04818 313 aa10.94□□□□□ -0.66
COL6A3-212ENST00000491769 GCM2O75603 506 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-212ENST00000491769 HBDP02042 147 aa10.93□□□□□ -0.66
COL6A3-212ENST00000491769 DEFB130BP0DP73 79 aa10.93□□□□□ -0.66
COL6A3-212ENST00000491769 DEFB130AP0DP74 79 aa10.93□□□□□ -0.66
COL6A3-212ENST00000491769 NEUROG1Q92886 237 aa10.93□□□□□ -0.66
COL6A3-212ENST00000491769 Q96MF0 132 aa10.93□□□□□ -0.66
COL6A3-212ENST00000491769 INS-IGF2F8WCM5 200 aa10.93□□□□□ -0.66
COL6A3-212ENST00000491769 INSP01308 110 aa10.93□□□□□ -0.66
COL6A3-212ENST00000491769 NPC2P61916 151 aa10.93□□□□□ -0.66
COL6A3-212ENST00000491769 PARD6GQ9BYG4 376 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-212ENST00000491769 ZNF257Q9Y2Q1 563 aa10.93□□□□□ -0.66
COL6A3-212ENST00000491769 SNRNP200O75643 2136 aaKnown RBP10.93□□□□□ -0.66
COL6A3-212ENST00000491769 STAG3L3P0CL85 134 aa10.93□□□□□ -0.66
COL6A3-212ENST00000491769 NPIPB13A6NJU9 1138 aa10.93□□□□□ -0.66
COL6A3-212ENST00000491769 DTX1Q86Y01 620 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms