RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 DPM3Q9P2X0 92 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 PRR19A6NJB7 356 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 OR11H12B2RN74 326 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 EFEMP2O95967 443 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 FAM159AQ6UWV7 190 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 HEPN1Q6WQI6 88 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 TCF23Q7RTU1 214 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 ST6GALNAC3Q8NDV1 305 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 OR11H1Q8NG94 326 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 OR11H2Q8NH07 326 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 LTBP1Q14766 1721 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 SAA1P0DJI8 122 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-210ENST00000487017 FOXC2Q99958 501 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 Q9H3A6 140 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 FOXD3Q9UJU5 478 aaPredicted RBP13.76□□□□□ -0.21
COL7A1-210ENST00000487017 CACNG7P62955 275 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 Q6AWC8 147 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 RTN4RL2Q86UN3 420 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 TRAV8-6A0A0B4J262 113 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 LINC01560Q8TB33 94 aa13.76□□□□□ -0.21
COL7A1-210ENST00000487017 TMEM170BQ5T4T1 132 aa13.75□□□□□ -0.21
COL7A1-210ENST00000487017 MBD3L1Q8WWY6 194 aa13.75□□□□□ -0.21
COL7A1-210ENST00000487017 DNAL4O96015 105 aa13.75□□□□□ -0.21
COL7A1-210ENST00000487017 RNASE7Q9H1E1 156 aaKnown RBP13.75□□□□□ -0.21
COL7A1-210ENST00000487017 HIGD1CA8MV81 97 aa13.75□□□□□ -0.21
COL7A1-210ENST00000487017 SNRPD3P62318 126 aaKnown RBP13.75□□□□□ -0.21
COL7A1-210ENST00000487017 SRSF7Q16629 238 aaKnown RBP eCLIP13.75□□□□□ -0.21
COL7A1-210ENST00000487017 MORN2Q502X0 79 aa13.75□□□□□ -0.21
COL7A1-210ENST00000487017 CIARTQ8N365 385 aaPredicted RBP13.75□□□□□ -0.21
COL7A1-210ENST00000487017 NRN1Q9NPD7 142 aa13.75□□□□□ -0.21
COL7A1-210ENST00000487017 SUPT4H1P63272 117 aaKnown RBP13.75□□□□□ -0.21
COL7A1-210ENST00000487017 PRDM13Q9H4Q3 707 aa13.75□□□□□ -0.21
COL7A1-210ENST00000487017 IGKV1D-33P01593 117 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 IGKV1-33P01594 117 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 ST6GALNAC6Q969X2 333 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 CCL19Q99731 98 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 IGKV1-12A0A0C4DH73 117 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 M0R381 172 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 CEACAM4O75871 244 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 IGKV1D-12P01611 117 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 BSPH1Q075Z2 132 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 C9orf106Q8NAJ2 232 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 NDUFAF3Q9BU61 184 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 REG4Q9BYZ8 158 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 SNAI2O43623 268 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 C21orf62Q9NYP8 219 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 GBF1Q92538 1859 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 MTURNQ8N3F0 131 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 DEPPQ9NTK1 212 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 FBXL7Q9UJT9 491 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 MRPS16Q9Y3D3 137 aaKnown RBP13.74□□□□□ -0.21
COL7A1-210ENST00000487017 ANK1P16157 1881 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 ICE1Q9Y2F5 2266 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 COLCA2A8K830 154 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 EFNA2O43921 213 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 FOXH1O75593 365 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 ZNF418Q8TF45 676 aaPredicted RBP13.74□□□□□ -0.21
COL7A1-210ENST00000487017 COPS9Q8WXC6 57 aa13.74□□□□□ -0.21
COL7A1-210ENST00000487017 PAPPA-AS1Q5QFB9 102 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 VSIRQ9H7M9 311 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 PRDM6Q9NQX0 595 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 IGHV3OR16-8A0A075B7F1 116 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 FGFBP3Q8TAT2 258 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 OTORQ9NRC9 128 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 CASP8AP2Q9UKL3 1982 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 ATP5LO75964 103 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 PDLIM4P50479 330 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 OSTCQ9NRP0 149 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 FAM90A9PA6NNJ1 464 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 NAPSAO96009 420 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 TRGV3P03979 118 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 GLRX5Q86SX6 157 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 ZIC4Q8N9L1 334 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 TMEM242Q9NWH2 141 aa13.73□□□□□ -0.21
COL7A1-210ENST00000487017 SIP14410 1827 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 NABP1Q96AH0 204 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 C17orf100A8MU93 164 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 TGFAP01135 160 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 OR9G9P0C7N8 305 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 FAM166AQ6J272 317 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 FAM57AQ8TBR7 257 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 ARPC1AQ92747 370 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 A0A1B0GW64 132 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 ASIPP42127 132 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 ORMDL3Q8N138 153 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 TTC9CQ8N5M4 171 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 MESP1Q9BRJ9 268 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 WDR83OSQ9Y284 106 aa13.72□□□□□ -0.21
COL7A1-210ENST00000487017 GNG5P63218 68 aa13.71□□□□□ -0.21
COL7A1-210ENST00000487017 NEUROG1Q92886 237 aa13.71□□□□□ -0.21
COL7A1-210ENST00000487017 DUTP33316 252 aaKnown RBP13.71□□□□□ -0.21
COL7A1-210ENST00000487017 A0A1W2PRE2 83 aa13.71□□□□□ -0.21
COL7A1-210ENST00000487017 FER1L6-AS1Q8NA97 138 aa13.71□□□□□ -0.21
COL7A1-210ENST00000487017 FAM186AA6NE01 2351 aa13.71□□□□□ -0.21
COL7A1-210ENST00000487017 OCC1Q8TAD7 63 aa13.71□□□□□ -0.22
COL7A1-210ENST00000487017 ITLN2Q8WWU7 325 aaPredicted RBP13.71□□□□□ -0.22
COL7A1-210ENST00000487017 WDR90Q96KV7 1748 aa13.71□□□□□ -0.22
COL7A1-210ENST00000487017 CCL3L1P16619 93 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 EFNB3Q15768 340 aa13.7□□□□□ -0.22
COL7A1-210ENST00000487017 MRPL16Q9NX20 251 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms