RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 A8MZ25 164 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 SEC14L6B5MCN3 397 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 DISC1C4P0D8 188 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 I3L2K1 104 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 K7EIM0 57 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 PITX3O75364 302 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 TRAPPC2P0DI81 140 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 TRAPPC2BP0DI82 140 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 PPP5CP53041 499 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 PRCDQ00LT1 54 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 ATP5G2Q06055 141 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 TMEM187Q14656 261 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 BAK1Q16611 211 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 FAM219AQ8IW50 185 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 SELENOHQ8IZQ5 122 aaKnown RBP4.33□□□□□ -1.72
CUX1-208ENST00000485792 Q8N402 240 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 DMBX1Q8NFW5 382 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 OR9G4Q8NGQ1 327 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 OR1P1Q8NH06 330 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 ABHD5Q8WTS1 349 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 DPF1Q92782 380 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 IL22RA2Q969J5 263 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 LSM10Q969L4 123 aaKnown RBP4.33□□□□□ -1.72
CUX1-208ENST00000485792 CXorf58Q96LI9 332 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 ZNF436Q9C0F3 470 aaPredicted RBP4.33□□□□□ -1.72
CUX1-208ENST00000485792 COMMD5Q9GZQ3 224 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 NAA60Q9H7X0 242 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 ZC4H2Q9NQZ6 224 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 SCP2D1Q9UJQ7 156 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 OR51B2Q9Y5P1 312 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 ALMS1Q8TCU4 4167 aa4.33□□□□□ -1.72
CUX1-208ENST00000485792 EPPK1P58107 5090 aaKnown RBP4.32□□□□□ -1.72
CUX1-208ENST00000485792 NOL3O60936 208 aaKnown RBP4.32□□□□□ -1.72
CUX1-208ENST00000485792 SNAPC5O75971 98 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 OR2J3O76001 311 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 DHFRP00374 187 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 IGHV3-23P01764 117 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 CTSGP08311 255 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 OR5AC1P0C628 307 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 OR13C7P0DN81 318 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 S100GP29377 79 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 ELLP55199 621 aaPredicted RBP4.32□□□□□ -1.72
CUX1-208ENST00000485792 ERVK-16P61578 105 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 EXOSC2Q13868 293 aaKnown RBP4.32□□□□□ -1.72
CUX1-208ENST00000485792 SP6Q3SY56 376 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 NMSQ5H8A3 153 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 H2BFWTQ7Z2G1 175 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 CCDC71LQ8N9Z2 235 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 OR1L6Q8NGR2 347 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 SCARB1Q8WTV0 552 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 RBPMSQ93062 196 aaKnown RBP4.32□□□□□ -1.72
CUX1-208ENST00000485792 SCGB3A2Q96PL1 93 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 PRR25Q96S07 402 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 PHB2Q99623 299 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 B9D2Q9BPU9 175 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 SLC25A21Q9BQT8 299 aaPredicted RBP4.32□□□□□ -1.72
CUX1-208ENST00000485792 SPATA25Q9BR10 227 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 COPZ2Q9P299 210 aa4.32□□□□□ -1.72
CUX1-208ENST00000485792 ZNF256Q9Y2P7 627 aaPredicted RBP4.32□□□□□ -1.72
CUX1-208ENST00000485792 A0A0B4J2A0 478 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 TMEM213A2RRL7 107 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 ZNF785A8K8V0 405 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 PPP5D1E7EU14 171 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 PLA2G10O15496 165 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 ST8SIA3O43173 380 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 GGCTO75223 188 aaKnown RBP4.31□□□□□ -1.72
CUX1-208ENST00000485792 CLEC3BP05452 202 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 RNASE2P10153 161 aaKnown RBP4.31□□□□□ -1.72
CUX1-208ENST00000485792 SLC25A6P12236 298 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 SPNP16150 400 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 S100A5P33763 92 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 SYNJ2BPP57105 145 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 AP3S2P59780 193 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 UBE2MP61081 183 aaKnown RBP4.31□□□□□ -1.72
CUX1-208ENST00000485792 SCGB2B2Q4G0G5 96 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 C4orf46Q504U0 113 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 TMEM128Q5BJH2 165 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 SPINK9Q5DT21 86 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 SPANXN2Q5MJ10 180 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 SPSB3Q6PJ21 355 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 UNQ9165/PRO28630Q6UXU0 137 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 LINC00322Q6ZN03 302 aaPredicted RBP4.31□□□□□ -1.72
CUX1-208ENST00000485792 TOMM5Q8N4H5 51 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 CLRN3Q8NCR9 226 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 NUDT10Q8NFP7 164 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 OR2K2Q8NGT1 345 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 CACNG8Q8WXS5 425 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 NUDT11Q96G61 164 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 OR10C1Q96KK4 312 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 TXN2Q99757 166 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 WFDC10AQ9H1F0 79 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 ZNF355PQ9NSJ1 428 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 THYN1Q9P016 225 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 HSPB7Q9UBY9 170 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 SHPKQ9UHJ6 478 aa4.31□□□□□ -1.72
CUX1-208ENST00000485792 DUXBA0A1W2PPF3 345 aa4.3□□□□□ -1.72
CUX1-208ENST00000485792 NAP1L6A6NFF2 107 aa4.3□□□□□ -1.72
CUX1-208ENST00000485792 C9orf118A6NHY6 69 aa4.3□□□□□ -1.72
CUX1-208ENST00000485792 C2orf70A6NJV1 201 aa4.3□□□□□ -1.72
CUX1-208ENST00000485792 K7EMT4 169 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms