RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TMED3Q9Y3Q3 217 aa12.14□□□□□ -0.47
UPF3A-208ENST00000484246 C9orf170A2RU37 121 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 F8W735 103 aaPredicted RBP12.13□□□□□ -0.47
UPF3A-208ENST00000484246 CORTO00230 105 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 PITX3O75364 302 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 RNASE2P10153 161 aaKnown RBP12.13□□□□□ -0.47
UPF3A-208ENST00000484246 ARL3P36405 182 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 DHRS2Q13268 280 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 ASAH1Q13510 395 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 SPSB3Q6PJ21 355 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 CLEC19AQ6UXS0 136 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 IL34Q6ZMJ4 242 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 SCARB1Q8WTV0 552 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 BSCL2Q96G97 398 aaPredicted RBP12.13□□□□□ -0.47
UPF3A-208ENST00000484246 C20orf85Q9H1P6 137 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 GAR1Q9NY12 217 aaKnown RBP12.13□□□□□ -0.47
UPF3A-208ENST00000484246 C21orf62Q9NYP8 219 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 TBC1D24Q9ULP9 559 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 FLVCR2Q9UPI3 526 aa12.13□□□□□ -0.47
UPF3A-208ENST00000484246 A8MWP6 167 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 PPP5D1E7EU14 171 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 SAP30O75446 220 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 UPK1BO75841 260 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 IGHV3-23P01764 117 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 OR4E1P0C645 316 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 GPR183P32249 361 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 SNCAP37840 140 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 SUB1P53999 127 aaKnown RBP eCLIP12.12□□□□□ -0.47
UPF3A-208ENST00000484246 TNFRSF9Q07011 255 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 SPINK9Q5DT21 86 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 LYG2Q86SG7 212 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 OR4C12Q96R67 309 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 TXN2Q99757 166 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 ENY2Q9NPA8 101 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 PEMTQ9UBM1 199 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 S4R3C0 116 aa12.12□□□□□ -0.47
UPF3A-208ENST00000484246 FAM90A26D6RGX4 464 aa12.11□□□□□ -0.47
UPF3A-208ENST00000484246 TGOLN2O43493 480 aa12.11□□□□□ -0.47
UPF3A-208ENST00000484246 IGLV1-51P01701 117 aa12.11□□□□□ -0.47
UPF3A-208ENST00000484246 CLEC3BP05452 202 aa12.11□□□□□ -0.47
UPF3A-208ENST00000484246 CSN3P07498 182 aa12.11□□□□□ -0.47
UPF3A-208ENST00000484246 HTR2BP41595 481 aa12.11□□□□□ -0.47
UPF3A-208ENST00000484246 LINC01559Q495D7 138 aa12.11□□□□□ -0.47
UPF3A-208ENST00000484246 ZNF436Q9C0F3 470 aaPredicted RBP12.11□□□□□ -0.47
UPF3A-208ENST00000484246 OR2C1O95371 312 aa12.1□□□□□ -0.47
UPF3A-208ENST00000484246 MT-CO2P00403 227 aa12.1□□□□□ -0.47
UPF3A-208ENST00000484246 TCRBP04435 133 aa12.1□□□□□ -0.47
UPF3A-208ENST00000484246 ANXA7P20073 488 aaKnown RBP12.1□□□□□ -0.47
UPF3A-208ENST00000484246 C2orf83Q53S99 150 aa12.1□□□□□ -0.47
UPF3A-208ENST00000484246 MZT2BQ6NZ67 158 aa12.1□□□□□ -0.47
UPF3A-208ENST00000484246 COQ8AQ8NI60 647 aa12.1□□□□□ -0.47
UPF3A-208ENST00000484246 MISP3Q96FF7 219 aa12.1□□□□□ -0.47
UPF3A-208ENST00000484246 PRB2P02812 416 aaPredicted RBP12.09□□□□□ -0.47
UPF3A-208ENST00000484246 ATP5IP56385 69 aaPredicted RBP12.09□□□□□ -0.47
UPF3A-208ENST00000484246 FAM106AQ4KMX7 169 aa12.09□□□□□ -0.47
UPF3A-208ENST00000484246 PLET1Q6UQ28 207 aa12.09□□□□□ -0.47
UPF3A-208ENST00000484246 SLC24A4Q8NFF2 622 aa12.09□□□□□ -0.47
UPF3A-208ENST00000484246 MITD1Q8WV92 249 aa12.09□□□□□ -0.47
UPF3A-208ENST00000484246 ZNF256Q9Y2P7 627 aaPredicted RBP12.09□□□□□ -0.47
UPF3A-208ENST00000484246 TGP01266 2768 aa12.09□□□□□ -0.47
UPF3A-208ENST00000484246 WI2-2373I1.2A0A1W2PRP0 233 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 TMEM213A2RRL7 107 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 CEBPZOSA8MTT3 80 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 K7EIL1 84 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 ADMP35318 185 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 MFAP4P55083 255 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 ELLP55199 621 aaPredicted RBP12.08□□□□□ -0.48
UPF3A-208ENST00000484246 DCTN2Q13561 401 aaKnown RBP12.08□□□□□ -0.48
UPF3A-208ENST00000484246 C4orf46Q504U0 113 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 GGNBP1Q5YKI7 109 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 NOXA1Q86UR1 476 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 OR2K2Q8NGT1 345 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 OR1S1Q8NH92 325 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 RNASEH2CQ8TDP1 164 aaKnown RBP12.08□□□□□ -0.48
UPF3A-208ENST00000484246 TMEM190Q8WZ59 177 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 HEYLQ9NQ87 328 aaPredicted RBP12.08□□□□□ -0.48
UPF3A-208ENST00000484246 NUDT15Q9NV35 164 aa12.08□□□□□ -0.48
UPF3A-208ENST00000484246 FAM240BA0A1B0GVZ2 78 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 OR2T8A6NH00 312 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 C2orf70A6NJV1 201 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 NDUFA4O00483 81 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 CTSGP08311 255 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 PRKDCP78527 4128 aaKnown RBP12.07□□□□□ -0.48
UPF3A-208ENST00000484246 PRR20EP86478 221 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 PRR20CP86479 221 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 PRR20DP86480 221 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 PRR20BP86481 221 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 PRR20AP86496 221 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 IFITM3Q01628 133 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 ADAMTSL5Q6ZMM2 481 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 DTD1Q8TEA8 209 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 TMEM170AQ8WVE7 144 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 MARC2Q969Z3 335 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 ZNF414Q96IQ9 312 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 HIPK2Q9H2X6 1198 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 U3KQ87 197 aa12.07□□□□□ -0.48
UPF3A-208ENST00000484246 IGHV3-21A0A0B4J1V1 117 aa12.06□□□□□ -0.48
UPF3A-208ENST00000484246 RPS10-NUDT3A0A1W2PQS6 291 aa12.06□□□□□ -0.48
UPF3A-208ENST00000484246 LY86O95711 162 aa12.06□□□□□ -0.48
UPF3A-208ENST00000484246 HOXB5P09067 269 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms