RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 CHRDL1Q9BU40 450 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 A0A0B4J2A0 478 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 TMEM213A2RRL7 107 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 MT-CO2P00403 227 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 IGHV3-48P01763 117 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 RNASE2P10153 161 aaKnown RBP11.81□□□□□ -0.52
HMGA1-206ENST00000478214 ANXA3P12429 323 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 IL7P13232 177 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 SPCS3P61009 180 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 CD69Q07108 199 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 Q56UQ5 140 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 TMEM128Q5BJH2 165 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 LGI3Q8N145 548 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 OR52E5Q8NH55 327 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 DYNLRB2Q8TF09 96 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 CACNG8Q8WXS5 425 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 PINX1Q96BK5 328 aaKnown RBP11.81□□□□□ -0.52
HMGA1-206ENST00000478214 BSCL2Q96G97 398 aaPredicted RBP11.81□□□□□ -0.52
HMGA1-206ENST00000478214 ATP6V0BQ99437 205 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 ENY2Q9NPA8 101 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 SHPKQ9UHJ6 478 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 SMAD5-AS1Q9Y6J3 95 aa11.81□□□□□ -0.52
HMGA1-206ENST00000478214 A8MWP6 167 aa11.8□□□□□ -0.52
HMGA1-206ENST00000478214 CBLN1P23435 193 aa11.8□□□□□ -0.52
HMGA1-206ENST00000478214 VAMP1P23763 118 aa11.8□□□□□ -0.52
HMGA1-206ENST00000478214 ADMP35318 185 aa11.8□□□□□ -0.52
HMGA1-206ENST00000478214 DEFB114Q30KQ6 69 aa11.8□□□□□ -0.52
HMGA1-206ENST00000478214 CD300EQ496F6 205 aaPredicted RBP11.8□□□□□ -0.52
HMGA1-206ENST00000478214 TM4SF20Q53R12 229 aa11.8□□□□□ -0.52
HMGA1-206ENST00000478214 NMSQ5H8A3 153 aa11.8□□□□□ -0.52
HMGA1-206ENST00000478214 SPSB3Q6PJ21 355 aa11.8□□□□□ -0.52
HMGA1-206ENST00000478214 ZNF436Q9C0F3 470 aaPredicted RBP11.8□□□□□ -0.52
HMGA1-206ENST00000478214 SELENOKQ9Y6D0 94 aa11.8□□□□□ -0.52
HMGA1-206ENST00000478214 NAP1L6A6NFF2 107 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 NXPH3O95157 252 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 CTSGP08311 255 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 SULT1A3P0DMM9 295 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 SULT1A4P0DMN0 295 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 MFAP4P55083 255 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 SRPXP78539 464 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 PPP1R1AQ13522 171 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 RBMS2Q15434 407 aaKnown RBP11.79□□□□□ -0.52
HMGA1-206ENST00000478214 ANKRD55Q3KP44 614 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 PVRIGQ6DKI7 326 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 LCN12Q6JVE5 192 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 Q8N1Y9 231 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 CENPSQ8N2Z9 138 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 UXS1Q8NBZ7 420 aa11.79□□□□□ -0.52
HMGA1-206ENST00000478214 COL7A1Q02388 2944 aa11.78□□□□□ -0.52
HMGA1-206ENST00000478214 A6NHS1 94 aa11.78□□□□□ -0.52
HMGA1-206ENST00000478214 FCGR2BP31994 310 aaPredicted RBP11.78□□□□□ -0.52
HMGA1-206ENST00000478214 SUB1P53999 127 aaKnown RBP eCLIP11.78□□□□□ -0.52
HMGA1-206ENST00000478214 BSXQ3C1V8 233 aa11.78□□□□□ -0.52
HMGA1-206ENST00000478214 C11orf87Q6NUJ2 197 aa11.78□□□□□ -0.52
HMGA1-206ENST00000478214 OR2K2Q8NGT1 345 aa11.78□□□□□ -0.52
HMGA1-206ENST00000478214 TMEM190Q8WZ59 177 aa11.78□□□□□ -0.52
HMGA1-206ENST00000478214 PALMDQ9NP74 551 aa11.78□□□□□ -0.52
HMGA1-206ENST00000478214 HEYLQ9NQ87 328 aaPredicted RBP11.78□□□□□ -0.52
HMGA1-206ENST00000478214 UFC1Q9Y3C8 167 aa11.78□□□□□ -0.52
HMGA1-206ENST00000478214 IGHV3OR16-8A0A075B7F1 116 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 ZNF785A8K8V0 405 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 CENPXA8MT69 81 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 CEBPZOSA8MTT3 80 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 NDUFB6O95139 128 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 SFT2D2O95562 160 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 BTCP35070 178 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 ELLP55199 621 aaPredicted RBP11.77□□□□□ -0.53
HMGA1-206ENST00000478214 SMCO1Q147U7 214 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 CNPY1Q3B7I2 92 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 ZNF414Q96IQ9 312 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 TXN2Q99757 166 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 ASCL2Q99929 193 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 GAR1Q9NY12 217 aaKnown RBP11.77□□□□□ -0.53
HMGA1-206ENST00000478214 TECRQ9NZ01 308 aaKnown RBP11.77□□□□□ -0.53
HMGA1-206ENST00000478214 MLXQ9UH92 298 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 FLVCR2Q9UPI3 526 aa11.77□□□□□ -0.53
HMGA1-206ENST00000478214 NDUFA4O00483 81 aa11.76□□□□□ -0.53
HMGA1-206ENST00000478214 NUPL2O15504 423 aaKnown RBP11.76□□□□□ -0.53
HMGA1-206ENST00000478214 C8orf88P0DMB2 117 aa11.76□□□□□ -0.53
HMGA1-206ENST00000478214 LRTM2Q8N967 370 aa11.76□□□□□ -0.53
HMGA1-206ENST00000478214 MARC2Q969Z3 335 aa11.76□□□□□ -0.53
HMGA1-206ENST00000478214 WDR89Q96FK6 387 aaPredicted RBP11.76□□□□□ -0.53
HMGA1-206ENST00000478214 C7orf50Q9BRJ6 194 aaKnown RBP11.76□□□□□ -0.53
HMGA1-206ENST00000478214 C20orf24Q9BUV8 137 aa11.76□□□□□ -0.53
HMGA1-206ENST00000478214 FNDC4Q9H6D8 234 aaPredicted RBP11.76□□□□□ -0.53
HMGA1-206ENST00000478214 A0A1B0GU03 582 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 DUXBA0A1W2PPF3 345 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 CORTO00230 105 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 PLA2G10O15496 165 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 ZNF207O43670 478 aaKnown RBP11.75□□□□□ -0.53
HMGA1-206ENST00000478214 GNG7O60262 68 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 HTR2BP41595 481 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 NPBWR1P48145 328 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 TNFRSF9Q07011 255 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 MLANAQ16655 118 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 BTNL8Q6UX41 500 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 DUSP18Q8NEJ0 188 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 OR1S1Q8NH92 325 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 TMEM170AQ8WVE7 144 aa11.75□□□□□ -0.53
HMGA1-206ENST00000478214 DAZ1Q9NQZ3 744 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms