RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 SNCAP37840 140 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 RPL5P46777 297 aaKnown RBP9.02□□□□□ -0.97
SYNE1-223ENST00000476519 AKR1C2P52895 323 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 SUB1P53999 127 aaKnown RBP eCLIP9.02□□□□□ -0.97
SYNE1-223ENST00000476519 TRIM16LQ309B1 348 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 OR13C8Q8NGS7 320 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 IL17DQ8TAD2 202 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 DYNC2LI1Q8TCX1 351 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 SMIM4Q8WVI0 70 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 MISP3Q96FF7 219 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 DIRAS2Q96HU8 199 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 C20orf24Q9BUV8 137 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 CCDC59Q9P031 241 aaKnown RBP9.02□□□□□ -0.97
SYNE1-223ENST00000476519 TENM2Q9NT68 2774 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 CSMD3Q7Z407 3707 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 LOC102724200A0A096LPH7 203 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-223ENST00000476519 CDS2O95674 445 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 IFNA17P01571 189 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 NPBWR1P48145 328 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 PPP5CP53041 499 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 IZUMO4Q1ZYL8 232 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 SP6Q3SY56 376 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 PVRIGQ6DKI7 326 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 FAM219AQ8IW50 185 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 DUSP18Q8NEJ0 188 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 MARCH1Q8TCQ1 289 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 OR10C1Q96KK4 312 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 RTBDNQ9BSG5 229 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-223ENST00000476519 PDCD10Q9BUL8 212 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 GGTLC1Q9BX51 225 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 NXF2Q9GZY0 626 aaKnown RBP9.01□□□□□ -0.97
SYNE1-223ENST00000476519 WFDC10AQ9H1F0 79 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 RSL24D1Q9UHA3 163 aaKnown RBP9.01□□□□□ -0.97
SYNE1-223ENST00000476519 SMPXQ9UHP9 88 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 C14orf166Q9Y224 244 aaKnown RBP9.01□□□□□ -0.97
SYNE1-223ENST00000476519 SELENOKQ9Y6D0 94 aa9.01□□□□□ -0.97
SYNE1-223ENST00000476519 STARD9Q9P2P6 4700 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 TEX13DA0A0J9YY54 714 aaPredicted RBP9□□□□□ -0.97
SYNE1-223ENST00000476519 CORTO00230 105 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 ST8SIA3O43173 380 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 YIF1AO95070 293 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 AKAIN1P0CW23 69 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 ETV6P41212 452 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 CMC4P56277 68 aaPredicted RBP9□□□□□ -0.97
SYNE1-223ENST00000476519 DHODHQ02127 395 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 IL18Q14116 193 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 AARDQ4LEZ3 155 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 SLC35G3Q8N808 338 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 OR52E5Q8NH55 327 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 GLYATL2Q8WU03 294 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 SCGB3A2Q96PL1 93 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 PRRT1Q99946 306 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 FAM110AQ9BQ89 295 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 TMEM222Q9H0R3 208 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 CTNNBIP1Q9NSA3 81 aaPredicted RBP9□□□□□ -0.97
SYNE1-223ENST00000476519 CACFD1Q9UGQ2 172 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 GPR132Q9UNW8 380 aa9□□□□□ -0.97
SYNE1-223ENST00000476519 TRAV14DV4A0A0A6YYC5 116 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 OR4C46A6NHA9 309 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 GSTZ1O43708 216 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-223ENST00000476519 GNG7O60262 68 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 NOL3O60936 208 aaKnown RBP8.99□□□□□ -0.97
SYNE1-223ENST00000476519 CD5P06127 495 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 SPCS3P61009 180 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 TMEM116Q8NCL8 245 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 RNASE11Q8TAA1 199 aaKnown RBP8.99□□□□□ -0.97
SYNE1-223ENST00000476519 PINX1Q96BK5 328 aaKnown RBP8.99□□□□□ -0.97
SYNE1-223ENST00000476519 SOSTQ9BQB4 213 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 RHPN1-AS1Q9BWJ2 59 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 SLIRPQ9GZT3 109 aaKnown RBP8.99□□□□□ -0.97
SYNE1-223ENST00000476519 NAA60Q9H7X0 242 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 ENY2Q9NPA8 101 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 KCNIP3Q9Y2W7 256 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 DNAH1Q9P2D7 4330 aa8.99□□□□□ -0.97
SYNE1-223ENST00000476519 RYR2Q92736 4967 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 IGHV7-4-1A0A0J9YVY3 117 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 ANKRD20A5PA0PJZ0 165 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 FABP12A6NFH5 140 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 UBE2CO00762 179 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 CHEK1O14757 476 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 ZNF207O43670 478 aaKnown RBP8.98□□□□□ -0.97
SYNE1-223ENST00000476519 OR5AC1P0C628 307 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 BMI1P35226 326 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 SPINK9Q5DT21 86 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 ZFAND6Q6FIF0 208 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 Q6ZRM9 215 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 OR4C16Q8NGL9 310 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 RBPMSQ93062 196 aaKnown RBP8.98□□□□□ -0.97
SYNE1-223ENST00000476519 ZNF414Q96IQ9 312 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 GINS3Q9BRX5 216 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 C6orf62Q9GZU0 229 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-223ENST00000476519 RETNQ9HD89 108 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 SCP2D1Q9UJQ7 156 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 TMEM56-RWDD3S4R434 201 aa8.98□□□□□ -0.97
SYNE1-223ENST00000476519 IGHV3OR16-8A0A075B7F1 116 aa8.97□□□□□ -0.97
SYNE1-223ENST00000476519 CRYM-AS1A6NIL9 109 aa8.97□□□□□ -0.97
SYNE1-223ENST00000476519 H3BMQ9 156 aa8.97□□□□□ -0.97
SYNE1-223ENST00000476519 TMEM50AO95807 157 aa8.97□□□□□ -0.97
SYNE1-223ENST00000476519 IGHV3-48P01763 117 aa8.97□□□□□ -0.97
SYNE1-223ENST00000476519 RNASE2P10153 161 aaKnown RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms