RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ATP6V0BQ99437 205 aa10.52□□□□□ -0.72
UPF3A-204ENST00000475218 FKBP11Q9NYL4 201 aa10.52□□□□□ -0.72
UPF3A-204ENST00000475218 UFC1Q9Y3C8 167 aa10.52□□□□□ -0.72
UPF3A-204ENST00000475218 DNAH1Q9P2D7 4330 aa10.52□□□□□ -0.73
UPF3A-204ENST00000475218 PRCDQ00LT1 54 aa10.52□□□□□ -0.73
UPF3A-204ENST00000475218 H2BFWTQ7Z2G1 175 aa10.52□□□□□ -0.73
UPF3A-204ENST00000475218 ARRDC1Q8N5I2 433 aa10.52□□□□□ -0.73
UPF3A-204ENST00000475218 ZNF114Q8NC26 417 aa10.52□□□□□ -0.73
UPF3A-204ENST00000475218 ZNF486Q96H40 463 aaPredicted RBP10.52□□□□□ -0.73
UPF3A-204ENST00000475218 TMEM56Q96MV1 263 aa10.52□□□□□ -0.73
UPF3A-204ENST00000475218 A0A0B4J293 547 aa10.51□□□□□ -0.73
UPF3A-204ENST00000475218 IGHV3-48P01763 117 aa10.51□□□□□ -0.73
UPF3A-204ENST00000475218 PIGPP57054 158 aa10.51□□□□□ -0.73
UPF3A-204ENST00000475218 SPSB3Q6PJ21 355 aa10.51□□□□□ -0.73
UPF3A-204ENST00000475218 TMEM229BQ8NBD8 167 aa10.51□□□□□ -0.73
UPF3A-204ENST00000475218 OR52B4Q8NGK2 314 aa10.51□□□□□ -0.73
UPF3A-204ENST00000475218 C5orf66Q9H5L9 145 aa10.51□□□□□ -0.73
UPF3A-204ENST00000475218 TRAV25A0A0B4J276 109 aa10.5□□□□□ -0.73
UPF3A-204ENST00000475218 A0A0G2JRQ6 117 aa10.5□□□□□ -0.73
UPF3A-204ENST00000475218 NDUFA4O00483 81 aa10.5□□□□□ -0.73
UPF3A-204ENST00000475218 CYB5BO43169 146 aa10.5□□□□□ -0.73
UPF3A-204ENST00000475218 ZNF207O43670 478 aaKnown RBP10.5□□□□□ -0.73
UPF3A-204ENST00000475218 TBPP20226 339 aa10.5□□□□□ -0.73
UPF3A-204ENST00000475218 HSPE1P61604 102 aaKnown RBP10.5□□□□□ -0.73
UPF3A-204ENST00000475218 CD300CQ08708 224 aa10.5□□□□□ -0.73
UPF3A-204ENST00000475218 SP6Q3SY56 376 aa10.5□□□□□ -0.73
UPF3A-204ENST00000475218 SPINK9Q5DT21 86 aa10.5□□□□□ -0.73
UPF3A-204ENST00000475218 FAAP20Q6NZ36 180 aa10.5□□□□□ -0.73
UPF3A-204ENST00000475218 SLC16A13Q7RTY0 426 aa10.5□□□□□ -0.73
UPF3A-204ENST00000475218 OR13C8Q8NGS7 320 aa10.5□□□□□ -0.73
UPF3A-204ENST00000475218 DAZ1Q9NQZ3 744 aaKnown RBP10.5□□□□□ -0.73
UPF3A-204ENST00000475218 CCNKO75909 580 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 IFNA6P05013 189 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 PGAM2P15259 253 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 S100GP29377 79 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 PLECQ15149 4684 aaKnown RBP10.49□□□□□ -0.73
UPF3A-204ENST00000475218 UBAC2Q8NBM4 344 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 OR1L6Q8NGR2 347 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 OR4A16Q8NH70 328 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 TERB2Q8NHR7 220 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 MISP3Q96FF7 219 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 LCE6AA0A183 80 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 GABARAPH6UMI1 98 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 K7EMT4 169 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 TSPAN4O14817 238 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 MT-CO2P00403 227 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 FCGR2BP31994 310 aaPredicted RBP10.49□□□□□ -0.73
UPF3A-204ENST00000475218 ODF3L2Q3SX64 289 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 Q56UQ5 140 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 PVRIGQ6DKI7 326 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 MARCH1Q8TCQ1 289 aa10.49□□□□□ -0.73
UPF3A-204ENST00000475218 C3orf85A0A1B0GTC6 90 aa10.48□□□□□ -0.73
UPF3A-204ENST00000475218 ST8SIA3O43173 380 aa10.48□□□□□ -0.73
UPF3A-204ENST00000475218 UCP1P25874 307 aa10.48□□□□□ -0.73
UPF3A-204ENST00000475218 STEAP1BQ6NZ63 245 aa10.48□□□□□ -0.73
UPF3A-204ENST00000475218 Q6ZRM9 215 aa10.48□□□□□ -0.73
UPF3A-204ENST00000475218 LHFPL5Q8TAF8 219 aa10.48□□□□□ -0.73
UPF3A-204ENST00000475218 OR10C1Q96KK4 312 aa10.48□□□□□ -0.73
UPF3A-204ENST00000475218 SPAG8Q99932 426 aaPredicted RBP10.48□□□□□ -0.73
UPF3A-204ENST00000475218 RTBDNQ9BSG5 229 aaPredicted RBP10.48□□□□□ -0.73
UPF3A-204ENST00000475218 C20orf24Q9BUV8 137 aa10.48□□□□□ -0.73
UPF3A-204ENST00000475218 C15orf62A8K5M9 175 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 INS-IGF2F8WCM5 200 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 RAB3DO95716 219 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 TAS2R19P59542 299 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 RBPMS2Q6ZRY4 209 aaKnown RBP10.47□□□□□ -0.73
UPF3A-204ENST00000475218 SMIM4Q8WVI0 70 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 GGTLC1Q9BX51 225 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 MRPL36Q9P0J6 103 aaKnown RBP10.47□□□□□ -0.73
UPF3A-204ENST00000475218 UBQLN2Q9UHD9 624 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 SMPXQ9UHP9 88 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 RGS5O15539 181 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 MFAP4P55083 255 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 ANKRD55Q3KP44 614 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 SCGB2B2Q4G0G5 96 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 RNF2Q99496 336 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 OVOL2Q9BRP0 275 aa10.47□□□□□ -0.73
UPF3A-204ENST00000475218 LOC102724200A0A096LPH7 203 aaPredicted RBP10.46□□□□□ -0.74
UPF3A-204ENST00000475218 IGHV3-49A0A0A0MS15 119 aa10.46□□□□□ -0.74
UPF3A-204ENST00000475218 CENPXA8MT69 81 aa10.46□□□□□ -0.74
UPF3A-204ENST00000475218 CHEK1O14757 476 aa10.46□□□□□ -0.74
UPF3A-204ENST00000475218 CTSDP07339 412 aaPredicted RBP10.46□□□□□ -0.74
UPF3A-204ENST00000475218 RNASE2P10153 161 aaKnown RBP10.46□□□□□ -0.74
UPF3A-204ENST00000475218 TRIM63Q969Q1 353 aa10.46□□□□□ -0.74
UPF3A-204ENST00000475218 TXN2Q99757 166 aa10.46□□□□□ -0.74
UPF3A-204ENST00000475218 IGHV7-4-1A0A0J9YVY3 117 aa10.45□□□□□ -0.74
UPF3A-204ENST00000475218 TNFSF8P32971 234 aa10.45□□□□□ -0.74
UPF3A-204ENST00000475218 AKR1C2P52895 323 aa10.45□□□□□ -0.74
UPF3A-204ENST00000475218 SSBP1Q04837 148 aaKnown RBP10.45□□□□□ -0.74
UPF3A-204ENST00000475218 ASAH1Q13510 395 aa10.45□□□□□ -0.74
UPF3A-204ENST00000475218 AARDQ4LEZ3 155 aa10.45□□□□□ -0.74
UPF3A-204ENST00000475218 FAM90A2PQ658T7 463 aa10.45□□□□□ -0.74
UPF3A-204ENST00000475218 OR4C16Q8NGL9 310 aa10.45□□□□□ -0.74
UPF3A-204ENST00000475218 ZFAND1Q8TCF1 268 aa10.45□□□□□ -0.74
UPF3A-204ENST00000475218 GLYATL2Q8WU03 294 aa10.45□□□□□ -0.74
UPF3A-204ENST00000475218 C15orf40Q8WUR7 153 aa10.45□□□□□ -0.74
UPF3A-204ENST00000475218 PINX1Q96BK5 328 aaKnown RBP10.45□□□□□ -0.74
UPF3A-204ENST00000475218 FNDC4Q9H6D8 234 aaPredicted RBP10.45□□□□□ -0.74
UPF3A-204ENST00000475218 COPZ2Q9P299 210 aa10.45□□□□□ -0.74
UPF3A-204ENST00000475218 EPPK1P58107 5090 aaKnown RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 138.3 ms