RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 MANBALQ9NQG1 85 aa6.31□□□□□ -1.4
USP4-207ENST00000462673 JPT1Q9UK76 154 aa6.31□□□□□ -1.4
USP4-207ENST00000462673 TIMM9Q9Y5J7 89 aa6.31□□□□□ -1.4
USP4-207ENST00000462673 F8P00451 2351 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.3□□□□□ -1.4
USP4-207ENST00000462673 IGHV3OR16-10A0A075B7F0 116 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 ZNF705GA8MUZ8 300 aaPredicted RBP6.3□□□□□ -1.4
USP4-207ENST00000462673 C12orf77C9JDV5 145 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 TMEM250H0YL14 139 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 BUB1B-PAK6H3BSN5 160 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 M0R143 59 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 YPEL1O60688 119 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 HBZP02008 142 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 TYMSP04818 313 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 RPLP1P05386 114 aaKnown RBP6.3□□□□□ -1.4
USP4-207ENST00000462673 SNRPCP09234 159 aaKnown RBP6.3□□□□□ -1.4
USP4-207ENST00000462673 FAM106CPP0CH98 169 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 GALR1P47211 349 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 HILS1P60008 231 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 SERF2P84101 59 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 ID3Q02535 119 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 TNFRSF9Q07011 255 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 TMEM267Q0VDI3 215 aaPredicted RBP6.3□□□□□ -1.4
USP4-207ENST00000462673 BSXQ3C1V8 233 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 PRAMEF5Q5TYX0 476 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 THNSL2Q86YJ6 484 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 MRPL41Q8IXM3 137 aaKnown RBP6.3□□□□□ -1.4
USP4-207ENST00000462673 LINC00311Q8N616 119 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 TMEM217Q8N7C4 229 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 MRPL30Q8TCC3 161 aaKnown RBP6.3□□□□□ -1.4
USP4-207ENST00000462673 C22orf15Q8WYQ4 148 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 RPEQ96AT9 228 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 YPEL2Q96QA6 119 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 S1PR3Q99500 378 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 PSG11Q9UQ72 335 aa6.3□□□□□ -1.4
USP4-207ENST00000462673 RBM7Q9Y580 266 aaKnown RBP6.3□□□□□ -1.4
USP4-207ENST00000462673 ZNF469Q96JG9 3925 aaPredicted RBP6.3□□□□□ -1.4
USP4-207ENST00000462673 C15orf65H3BRN8 121 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 ITGB1BP1O14713 200 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 VENTXO95231 258 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 IGLV1-47P01700 117 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 MBP02144 154 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 SSTR5P35346 364 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 IER3P46695 156 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 PSMB3P49720 205 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 RANP62826 216 aaKnown RBP6.29□□□□□ -1.4
USP4-207ENST00000462673 MEF2BQ02080 365 aaPredicted RBP6.29□□□□□ -1.4
USP4-207ENST00000462673 LTC4SQ16873 150 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 HLA-DRB5Q30154 266 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 DEFB112Q30KQ8 113 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 MORN2Q502X0 79 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 ZNF880Q6PDB4 577 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 ODF3L1Q8IXM7 274 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 ZNF664Q8N3J9 261 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 SIGLECL1Q8N7X8 197 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 LIN7CQ9NUP9 197 aaKnown RBP6.29□□□□□ -1.4
USP4-207ENST00000462673 CBY1Q9Y3M2 126 aa6.29□□□□□ -1.4
USP4-207ENST00000462673 ACANP16112 2415 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 A0A0U1RQK1 487 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 CTXND1A0A1B0GTU2 59 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 A0A1W2PRD5 423 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 A0A1W2PRF3 423 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 A0A1W2PRM7 423 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 MARCH11A6NNE9 402 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 ODF3BA8MYP8 253 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 RAB29O14966 203 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 TUSC2O75896 110 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 PFN1P07737 140 aaKnown RBP6.28□□□□□ -1.4
USP4-207ENST00000462673 LINC00614P0C842 121 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 MC5RP33032 325 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 LOXL3P58215 753 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 ERVFC1-1P60608 527 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 GAGE1Q13065 139 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 TMEM241Q24JQ0 296 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 LRRC75BQ2VPJ9 315 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 KRTAP21-3Q3LHN1 58 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 CXorf66Q5JRM2 361 aaPredicted RBP6.28□□□□□ -1.4
USP4-207ENST00000462673 LCN15Q6UWW0 184 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 ZNF66Q6ZN08 573 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 ZNF818PQ6ZRF7 136 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 TCF23Q7RTU1 214 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 BCL6BQ8N143 479 aaPredicted RBP6.28□□□□□ -1.4
USP4-207ENST00000462673 GBGT1Q8N5D6 347 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 LSM10Q969L4 123 aaKnown RBP6.28□□□□□ -1.4
USP4-207ENST00000462673 RPRMQ9NS64 109 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 ZNF581Q9P0T4 197 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 NAGKQ9UJ70 344 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 HILPDAQ9Y5L2 63 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 RFNGQ9Y644 331 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 CSPG4Q6UVK1 2322 aa6.28□□□□□ -1.4
USP4-207ENST00000462673 TRAV39A0A0B4J263 110 aa6.27□□□□□ -1.41
USP4-207ENST00000462673 A0A1B0GUS0 222 aa6.27□□□□□ -1.41
USP4-207ENST00000462673 UBE2L5PA0A1B0GUS4 154 aa6.27□□□□□ -1.41
USP4-207ENST00000462673 A0A1W2PPQ1 181 aa6.27□□□□□ -1.41
USP4-207ENST00000462673 FAM90A26D6RGX4 464 aa6.27□□□□□ -1.41
USP4-207ENST00000462673 HOXA3O43365 443 aaPredicted RBP6.27□□□□□ -1.41
USP4-207ENST00000462673 CHST1O43916 411 aa6.27□□□□□ -1.41
USP4-207ENST00000462673 MMP23AO75900 390 aa6.27□□□□□ -1.41
USP4-207ENST00000462673 RNASE1P07998 156 aaKnown RBP6.27□□□□□ -1.41
USP4-207ENST00000462673 SCTP09683 121 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms