RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 OR5B3Q8NH48 314 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 OR9G1Q8NH87 305 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 SNRNP40Q96DI7 357 aaKnown RBP9.6□□□□□ -0.87
CPSF3-202ENST00000460593 KLF13Q9Y2Y9 288 aaPredicted RBP9.6□□□□□ -0.87
CPSF3-202ENST00000460593 SP1P08047 785 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 CYB561P49447 251 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 GNG5P63218 68 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 LINC00696Q6ZRV3 163 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 IGF2BP2-AS1Q96M15 143 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 MEGF9Q9H1U4 602 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 PTPRBP23467 1997 aa9.6□□□□□ -0.87
CPSF3-202ENST00000460593 GOSR1O95249 250 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 UQCRFS1P47985 274 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 ERVK-16P61578 105 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 LRRC10Q5BKY1 277 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 SSX8Q7RTT4 187 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 MED13Q9UHV7 2174 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 IGKV3D-15A0A087WSY6 115 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 PCNX2A6NKB5 2137 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 PRR20EP86478 221 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 PRR20CP86479 221 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 PRR20DP86480 221 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 PRR20BP86481 221 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 PRR20AP86496 221 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 ZNF766Q5HY98 468 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 SMIM15Q7Z3B0 74 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 PPP1R32Q7Z5V6 425 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 PNKDQ8N490 385 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 LINC00470Q9BZP3 86 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 LY96Q9Y6Y9 160 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 GAGE12BA1L429 117 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 HIGD1CA8MV81 97 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 SMPD2O60906 423 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 GABRA6Q16445 453 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 NRN1LQ496H8 165 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 FAM120AOSQ5T036 256 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 C11orf53Q8IXP5 236 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 NUDT11Q96G61 164 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 TMEM70Q9BUB7 260 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 CSTL1Q9H114 145 aa9.59□□□□□ -0.87
CPSF3-202ENST00000460593 NAV3Q8IVL0 2385 aa9.58□□□□□ -0.88
CPSF3-202ENST00000460593 IGHV3OR15-7A0A075B7D8 119 aa9.58□□□□□ -0.88
CPSF3-202ENST00000460593 WISP2O76076 250 aa9.58□□□□□ -0.88
CPSF3-202ENST00000460593 PPOXP50336 477 aa9.58□□□□□ -0.88
CPSF3-202ENST00000460593 SSBP2P81877 361 aaPredicted RBP9.58□□□□□ -0.88
CPSF3-202ENST00000460593 RHOGP84095 191 aa9.58□□□□□ -0.88
CPSF3-202ENST00000460593 Q8IYB0 196 aa9.58□□□□□ -0.88
CPSF3-202ENST00000460593 ZNRD1Q9P1U0 126 aa9.58□□□□□ -0.88
CPSF3-202ENST00000460593 PLXNB1O43157 2135 aa9.58□□□□□ -0.88
CPSF3-202ENST00000460593 AGFG2O95081 481 aa9.58□□□□□ -0.88
CPSF3-202ENST00000460593 REG1AP05451 166 aa9.58□□□□□ -0.88
CPSF3-202ENST00000460593 S1PR3Q99500 378 aa9.58□□□□□ -0.88
CPSF3-202ENST00000460593 MRPL27Q9P0M9 148 aaKnown RBP9.58□□□□□ -0.88
CPSF3-202ENST00000460593 H3BTX0 84 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 LYZL6O75951 148 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 CSN3P07498 182 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 CD46P15529 392 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 ACP7Q6ZNF0 438 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 CD177Q8N6Q3 437 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 C15orf65H3BRN8 121 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 TMPRSS3P57727 454 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 UBE2L3P68036 154 aaKnown RBP9.57□□□□□ -0.88
CPSF3-202ENST00000460593 RAB31Q13636 194 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 TRIB1Q96RU8 372 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 FNDC4Q9H6D8 234 aaPredicted RBP9.57□□□□□ -0.88
CPSF3-202ENST00000460593 DUSP13Q9UII6 198 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 IGHV1-24A0A0C4DH33 117 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 PPIAL4DF5H284 164 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 KLK10O43240 276 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 SPINT2O43291 252 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 FABP6P51161 128 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 TBC1D28Q2M2D7 210 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 SLC25A34Q6PIV7 304 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 MBD6Q96DN6 1003 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 SAP30LQ9HAJ7 183 aa9.57□□□□□ -0.88
CPSF3-202ENST00000460593 TMEM238C9JI98 176 aa9.56□□□□□ -0.88
CPSF3-202ENST00000460593 Q71RC1 249 aaPredicted RBP9.56□□□□□ -0.88
CPSF3-202ENST00000460593 ENY2Q9NPA8 101 aa9.56□□□□□ -0.88
CPSF3-202ENST00000460593 TMEM167BQ9NRX6 74 aa9.56□□□□□ -0.88
CPSF3-202ENST00000460593 C21orf140B9A014 251 aa9.56□□□□□ -0.88
CPSF3-202ENST00000460593 SYS1-DBNDD2H3BUS1 97 aa9.56□□□□□ -0.88
CPSF3-202ENST00000460593 WDR82Q6UXN9 313 aa9.56□□□□□ -0.88
CPSF3-202ENST00000460593 DEFB125Q8N687 156 aa9.56□□□□□ -0.88
CPSF3-202ENST00000460593 TEX45Q8NA69 505 aa9.56□□□□□ -0.88
CPSF3-202ENST00000460593 ZNRF1Q8ND25 227 aa9.56□□□□□ -0.88
CPSF3-202ENST00000460593 OR10W1Q8NGF6 305 aa9.56□□□□□ -0.88
CPSF3-202ENST00000460593 PCSK5Q92824 1860 aa9.56□□□□□ -0.88
CPSF3-202ENST00000460593 BOD1L1Q8NFC6 3051 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 CLEC2AQ6UVW9 174 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 LINC00322Q6ZN03 302 aaPredicted RBP9.55□□□□□ -0.88
CPSF3-202ENST00000460593 TMEM116Q8NCL8 245 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 KLF14Q8TD94 323 aaPredicted RBP9.55□□□□□ -0.88
CPSF3-202ENST00000460593 SAP25Q8TEE9 199 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 MAP1BP46821 2468 aaKnown RBP9.55□□□□□ -0.88
CPSF3-202ENST00000460593 C15orf61A6NNL5 157 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 FAM201AQ5SY85 155 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 PGLYRP4Q96LB8 373 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 ASCL2Q99929 193 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 IFI27L2Q9H2X8 130 aa9.55□□□□□ -0.88
CPSF3-202ENST00000460593 AMMECR1Q9Y4X0 333 aaPredicted RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms