RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 RPS4XP62701 263 aaKnown RBP3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 HERVK_113P63121 156 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 DGCR2P98153 550 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 Q0VG73 95 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 PNRC1Q12796 327 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 MPV17L2Q567V2 206 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 LCN12Q6JVE5 192 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 TMEM14EPQ6UXP3 125 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 PIANPQ8IYJ0 282 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 DCAF4L2Q8NA75 395 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 VSTM2AQ8TAG5 236 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 SLC25A21Q9BQT8 299 aaPredicted RBP3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 AGMATQ9BSE5 352 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 CXXC4Q9H2H0 198 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 HEBP2Q9Y5Z4 205 aa3.89□□□□□ -1.79
CCDC88A-209ENST00000456975 TMEM131Q92545 1883 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 MYO18BQ8IUG5 2567 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 SMG1Q96Q15 3661 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 DOCK4Q8N1I0 1966 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 MYO18AQ92614 2054 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 URB1O60287 2271 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 A0A0D9SEW6 157 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 RIIAD1A6NNX1 92 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 C10orf142B7Z368 130 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 FAM90A26D6RGX4 464 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 J3QQQ9 107 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 OVOL1O14753 267 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 CREBL2O60519 120 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 LMX1BO60663 402 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 IL5P05113 134 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 TPT1P13693 172 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 MYOD1P15172 320 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 KLK2P20151 261 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 POLR2JP52435 117 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 GAGE2BQ13066 116 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 UNC119Q13432 240 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 KLF5Q13887 457 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 CLEC12BQ2HXU8 276 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 CEACAM16Q2WEN9 425 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 GAGE2EQ4V326 116 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 UBE2NLQ5JXB2 153 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 ASPHD1Q5U4P2 390 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 C10orf111Q8N326 155 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF843Q8N446 348 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 OR4K17Q8NGC6 315 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 OR1L3Q8NH93 324 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 SSMEM1Q8WWF3 244 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 MAL2Q969L2 176 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 S100A16Q96FQ6 103 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 S1PR3Q99500 378 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 Q9H8V8 135 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 NDUFB11Q9NX14 153 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 GAGE2DQ9UEU5 116 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 MYLKQ15746 1914 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 APC2O95996 2303 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 TENM4Q6N022 2769 aa3.88□□□□□ -1.79
CCDC88A-209ENST00000456975 MUC21A0A140T8X8 626 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 C5orf63A6NC05 138 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 ARRDC5A6NEK1 342 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 H3BRM9 83 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 WISP2O76076 250 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 IGLV3-19P01714 112 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 OPRM1P35372 400 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 ACVRL1P37023 503 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 PPP1CAP62136 330 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 CX3CL1P78423 397 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 CD226Q15762 336 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 SYT14P1Q58G82 188 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 PAGE3Q5JUK9 113 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 MUC21Q5SSG8 566 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF626Q68DY1 528 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 GAPTQ8N292 157 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF502Q8TBZ5 544 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 RTN4IP1Q8WWV3 396 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 NEUROG1Q92886 237 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 AMELYQ99218 206 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 C20orf78Q9BR46 151 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF670Q9BS34 389 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 CHST6Q9GZX3 395 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 SLC35B3Q9H1N7 401 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 SMDT1Q9H4I9 107 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 RERGLQ9H628 205 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 PDFQ9HBH1 243 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF331Q9NQX6 463 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 WASHC3Q9Y3C0 194 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF106Q9H2Y7 1883 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 TRAV5A0A0B4J249 113 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 A0A0G2JK05 382 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 A0A0J9YW62 118 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 TMEM250H0YL14 139 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 ZFAND5O76080 213 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 NDUFC2O95298 119 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 NTN1O95631 604 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 SLC25A4P12235 298 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 GPX3P22352 226 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 H2BFSP57053 126 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 RND3P61587 244 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 PHLDA2Q53GA4 152 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 C8orf82Q6P1X6 216 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 TMEM64Q6YI46 380 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms