RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SETD5Q9C0A6 1442 aa0.88□□□□□ -2.27
USP40-209ENST00000452724 A0A0D9SG52 128 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 C19orf84I3L1E1 186 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 FAAHO00519 579 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 HCRTO43612 131 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 PMP2P02689 132 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 SUPT4H1P63272 117 aaKnown RBP0.87□□□□□ -2.27
USP40-209ENST00000452724 EDDM3AQ14507 147 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 AKIRIN2Q53H80 203 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 DEFB128Q7Z7B8 93 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 OR6V1Q8N148 313 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 ANKRD29Q8N6D5 301 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 ZNF439Q8NDP4 499 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 PFN4Q8NHR9 129 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 ODF3Q96PU9 254 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 TSPAN32Q96QS1 320 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 REG4Q9BYZ8 158 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 MIXL1Q9H2W2 232 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.87□□□□□ -2.27
USP40-209ENST00000452724 CMTM6Q9NX76 183 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 SLC22A13Q9Y226 551 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 GLI3P10071 1580 aa0.87□□□□□ -2.27
USP40-209ENST00000452724 POLEQ07864 2286 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 TECTAO75443 2155 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 MUC16Q8WXI7 14507 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 TRAV9-1A0A075B6T8 112 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 OR4C46A6NHA9 309 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 IGKV1-5P01602 117 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 S100A6P06703 90 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 HTR1AP08908 422 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 CDKN2CP42773 168 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 RPL5P46777 297 aaKnown RBP0.86□□□□□ -2.27
USP40-209ENST00000452724 EIF2B2P49770 351 aaKnown RBP0.86□□□□□ -2.27
USP40-209ENST00000452724 MYL6P60660 151 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 LSM6P62312 80 aaKnown RBP0.86□□□□□ -2.27
USP40-209ENST00000452724 HIST1H3AP68431 136 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 CCL7P80098 99 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 H3F3AP84243 136 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 PRB3Q04118 309 aaPredicted RBP0.86□□□□□ -2.27
USP40-209ENST00000452724 AESQ08117 197 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 KISS1Q15726 138 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 KCNJ8Q15842 424 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 C10orf55Q5SWW7 151 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 KLK6Q92876 244 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 C8orf76Q96K31 380 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 SCGB3A1Q96QR1 104 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 OR51V1Q9H2C8 321 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 CKLFQ9UBR5 152 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 ROS1P08922 2347 aa0.86□□□□□ -2.27
USP40-209ENST00000452724 MTUS2Q5JR59 1369 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 A0A087WUJ7 227 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 TRAV26-2A0A0B4J265 109 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 EXOC1LA0A1B0GW35 172 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 FUOMA2VDF0 154 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 DPRXA6NFQ7 191 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 TMEM212A6NML5 194 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 CLPSP04118 112 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 TCRBP04435 133 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 SMIM10L2AP0DMW4 78 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 SMIM10L2BP0DMW5 78 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 COX6A1P12074 109 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 RANP62826 216 aaKnown RBP0.85□□□□□ -2.27
USP40-209ENST00000452724 SRSF6Q13247 344 aaKnown RBP0.85□□□□□ -2.27
USP40-209ENST00000452724 WRNQ14191 1432 aaPredicted RBP eCLIP0.85□□□□□ -2.27
USP40-209ENST00000452724 LCN15Q6UWW0 184 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.85□□□□□ -2.27
USP40-209ENST00000452724 AAED1Q7RTV5 226 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 HEATR5AQ86XA9 2040 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 TERB2Q8NHR7 220 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 H1FXQ92522 213 aaKnown RBP0.85□□□□□ -2.27
USP40-209ENST00000452724 C2orf50Q96LR7 162 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 PRAP1Q96NZ9 151 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 SERPINI1Q99574 410 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 CMSS1Q9BQ75 279 aaKnown RBP0.85□□□□□ -2.27
USP40-209ENST00000452724 DCSTAMPQ9H295 470 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 PKIGQ9Y2B9 76 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 SNURFQ9Y675 71 aa0.85□□□□□ -2.27
USP40-209ENST00000452724 SMIM9A6NGZ8 99 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 PIRO00625 290 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 OR5F1O95221 314 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 CRYZL1O95825 349 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 TCL1BO95988 128 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 HAND1O96004 215 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 SHBGP04278 402 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 RPS17P08708 135 aaKnown RBP0.84□□□□□ -2.27
USP40-209ENST00000452724 RBP1P09455 135 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 RPS20P60866 119 aaKnown RBP0.84□□□□□ -2.27
USP40-209ENST00000452724 RUNX1Q01196 453 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 TMEM97Q5BJF2 176 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 DPPA3Q6W0C5 159 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 ZNF826PQ6ZT77 177 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 MIR17HGQ75NE6 70 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 LINC00471Q8N535 108 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 ZNF565Q8N9K5 539 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 WFDC11Q8NEX6 87 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 OR4D11Q8NGI4 311 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 CT55Q8WUE5 264 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 PPP1R14BQ96C90 147 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 TRIM4Q9C037 500 aa0.84□□□□□ -2.27
USP40-209ENST00000452724 C11orf68Q9H3H3 251 aaKnown RBP0.84□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms