RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 VENTXO95231 258 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 PARD6GQ9BYG4 376 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-209ENST00000438120 RNASE7Q9H1E1 156 aaKnown RBP14.34□□□□□ -0.11
PTPRF-209ENST00000438120 TMEM133Q9H2Q1 129 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 THBDP07204 575 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 FAM209BQ5JX69 171 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 ERASQ7Z444 233 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 FMC1Q96HJ9 113 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 HEATR5BQ9P2D3 2071 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 A0A1B0GUT8 65 aa14.33□□□□□ -0.11
PTPRF-209ENST00000438120 VDAC2P45880 294 aaPredicted RBP14.33□□□□□ -0.12
PTPRF-209ENST00000438120 ESPL1Q14674 2120 aa14.33□□□□□ -0.12
PTPRF-209ENST00000438120 CD59P13987 128 aa14.33□□□□□ -0.12
PTPRF-209ENST00000438120 FAM90A1Q86YD7 464 aa14.33□□□□□ -0.12
PTPRF-209ENST00000438120 RNASEH2CQ8TDP1 164 aaKnown RBP14.33□□□□□ -0.12
PTPRF-209ENST00000438120 TBL2Q9Y4P3 447 aaKnown RBP14.33□□□□□ -0.12
PTPRF-209ENST00000438120 SDK2Q58EX2 2172 aa14.33□□□□□ -0.12
PTPRF-209ENST00000438120 PAPPA-AS1Q5QFB9 102 aa14.33□□□□□ -0.12
PTPRF-209ENST00000438120 ZNF497Q6ZNH5 498 aa14.33□□□□□ -0.12
PTPRF-209ENST00000438120 PYYP10082 97 aa14.33□□□□□ -0.12
PTPRF-209ENST00000438120 FER1L6-AS1Q8NA97 138 aa14.33□□□□□ -0.12
PTPRF-209ENST00000438120 H7C1H1 209 aa14.32□□□□□ -0.12
PTPRF-209ENST00000438120 C18orf12Q96KH6 178 aa14.32□□□□□ -0.12
PTPRF-209ENST00000438120 NDUFA3O95167 84 aa14.32□□□□□ -0.12
PTPRF-209ENST00000438120 LYPD3O95274 346 aa14.32□□□□□ -0.12
PTPRF-209ENST00000438120 CTAG1AP78358 180 aa14.32□□□□□ -0.12
PTPRF-209ENST00000438120 PPIFP30405 207 aaKnown RBP14.32□□□□□ -0.12
PTPRF-209ENST00000438120 FBLN7Q53RD9 439 aa14.32□□□□□ -0.12
PTPRF-209ENST00000438120 ZNF362Q5T0B9 420 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-209ENST00000438120 GFI1BQ5VTD9 330 aa14.32□□□□□ -0.12
PTPRF-209ENST00000438120 SSBP4Q9BWG4 385 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-209ENST00000438120 IGKV1D-8A0A087WSZ0 117 aa14.32□□□□□ -0.12
PTPRF-209ENST00000438120 TMEM183AQ8IXX5 376 aa14.32□□□□□ -0.12
PTPRF-209ENST00000438120 ZNF418Q8TF45 676 aaPredicted RBP14.32□□□□□ -0.12
PTPRF-209ENST00000438120 TRAV40A0A0B4J280 105 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 YPEL1O60688 119 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 CD7P09564 240 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 YPEL2Q96QA6 119 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 TIMM23O14925 209 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 TCF23Q7RTU1 214 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 A0A0A6YYD4 124 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 C1QTNF9BB2RNN3 333 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 SELLP14151 372 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 LRTM2Q8N967 370 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 SDF2L1Q9HCN8 221 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 SCN8AQ9UQD0 1980 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 HIGD1CA8MV81 97 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 DNAL4O96015 105 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 OR9G9P0C7N8 305 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 RHOGP84095 191 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 C15orf61A6NNL5 157 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 EFNA2O43921 213 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 IGHV1-46P01743 117 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 LDLRAD2Q5SZI1 272 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 CACNG8Q8WXS5 425 aa14.31□□□□□ -0.12
PTPRF-209ENST00000438120 CEP250Q9BV73 2442 aa14.3□□□□□ -0.12
PTPRF-209ENST00000438120 ARID2Q68CP9 1835 aa14.3□□□□□ -0.12
PTPRF-209ENST00000438120 SPTBN2O15020 2390 aa14.3□□□□□ -0.12
PTPRF-209ENST00000438120 NSUN5P1Q3KNT7 163 aa14.3□□□□□ -0.12
PTPRF-209ENST00000438120 CD33P20138 364 aa14.3□□□□□ -0.12
PTPRF-209ENST00000438120 COPS9Q8WXC6 57 aa14.3□□□□□ -0.12
PTPRF-209ENST00000438120 SLC25A28Q96A46 364 aa14.3□□□□□ -0.12
PTPRF-209ENST00000438120 OR10W1Q8NGF6 305 aa14.3□□□□□ -0.12
PTPRF-209ENST00000438120 NPFFR1Q9GZQ6 430 aa14.3□□□□□ -0.12
PTPRF-209ENST00000438120 PEMTQ9UBM1 199 aa14.3□□□□□ -0.12
PTPRF-209ENST00000438120 CSRP1P21291 193 aaKnown RBP14.3□□□□□ -0.12
PTPRF-209ENST00000438120 CACNG7P62955 275 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 C3orf36Q3SXR2 165 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 STHQ8IWL8 128 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 RNF126Q9BV68 326 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 ZNF236Q9UL36 1845 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 PATJQ8NI35 1801 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 ALKBH7Q9BT30 221 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-209ENST00000438120 MRPL16Q9NX20 251 aaKnown RBP14.29□□□□□ -0.12
PTPRF-209ENST00000438120 PAQR4Q8N4S7 273 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-209ENST00000438120 RNF125Q96EQ8 232 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 AKAP6Q13023 2319 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 SMIM13P0DJ93 91 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 BTCP35070 178 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 TMEM144Q7Z5S9 345 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 C1QTNF9P0C862 333 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 SRSF3P84103 164 aaKnown RBP14.29□□□□□ -0.12
PTPRF-209ENST00000438120 PMCHL2Q9BQD1 86 aa14.29□□□□□ -0.12
PTPRF-209ENST00000438120 PGPEP1LA6NFU8 196 aa14.28□□□□□ -0.12
PTPRF-209ENST00000438120 C2orf88Q9BSF0 95 aa14.28□□□□□ -0.12
PTPRF-209ENST00000438120 NTN3O00634 580 aaPredicted RBP14.28□□□□□ -0.12
PTPRF-209ENST00000438120 CRIPAKQ8N1N5 446 aa14.28□□□□□ -0.12
PTPRF-209ENST00000438120 FAM131CQ96AQ9 280 aa14.28□□□□□ -0.12
PTPRF-209ENST00000438120 NUDT11Q96G61 164 aa14.28□□□□□ -0.12
PTPRF-209ENST00000438120 JKAMPQ9P055 326 aa14.28□□□□□ -0.12
PTPRF-209ENST00000438120 MRPS16Q9Y3D3 137 aaKnown RBP14.28□□□□□ -0.12
PTPRF-209ENST00000438120 CIARTQ8N365 385 aaPredicted RBP14.28□□□□□ -0.12
PTPRF-209ENST00000438120 CHD5Q8TDI0 1954 aa14.28□□□□□ -0.12
PTPRF-209ENST00000438120 ARHGEF17Q96PE2 2063 aaPredicted RBP14.28□□□□□ -0.12
PTPRF-209ENST00000438120 TMEM50AO95807 157 aa14.28□□□□□ -0.12
PTPRF-209ENST00000438120 TDGF1P13385 188 aa14.28□□□□□ -0.12
PTPRF-209ENST00000438120 MST1P26927 711 aa14.28□□□□□ -0.12
PTPRF-209ENST00000438120 PRSS22Q9GZN4 317 aa14.28□□□□□ -0.12
PTPRF-209ENST00000438120 PSME4Q14997 1843 aa14.27□□□□□ -0.12
PTPRF-209ENST00000438120 TMEM219Q86XT9 240 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms