RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 TRBV9A0A0B4J1U6 114 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 TMEM89A2RUT3 159 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 H3BUA1 57 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 CORTO00230 105 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 SOX15O60248 233 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 CST7O76096 145 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 IGLV1-40P01703 118 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 IFNA4P05014 189 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 DEFA4P12838 97 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 HIST1H1BP16401 226 aaKnown RBP11.16□□□□□ -0.62
SF3B1-204ENST00000414963 S100A11P31949 105 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 GPX4P36969 197 aaPredicted RBP11.16□□□□□ -0.62
SF3B1-204ENST00000414963 EIF2B2P49770 351 aaKnown RBP11.16□□□□□ -0.62
SF3B1-204ENST00000414963 NHLH2Q02577 135 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 ARL16Q0P5N6 197 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 C9orf62Q8N4C0 152 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 OR10P1Q8NGE3 313 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 CACNG8Q8WXS5 425 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 GGACTQ9BVM4 153 aa11.16□□□□□ -0.62
SF3B1-204ENST00000414963 ZFHX3Q15911 3703 aa11.15□□□□□ -0.62
SF3B1-204ENST00000414963 FNDC10F2Z333 226 aa11.15□□□□□ -0.62
SF3B1-204ENST00000414963 IGHG4P01861 327 aa11.15□□□□□ -0.62
SF3B1-204ENST00000414963 HBG1P69891 147 aa11.15□□□□□ -0.62
SF3B1-204ENST00000414963 HBG2P69892 147 aa11.15□□□□□ -0.62
SF3B1-204ENST00000414963 EXOSC2Q13868 293 aaKnown RBP11.15□□□□□ -0.62
SF3B1-204ENST00000414963 ATP6V1FQ16864 119 aa11.15□□□□□ -0.62
SF3B1-204ENST00000414963 TMEM95Q3KNT9 176 aa11.15□□□□□ -0.62
SF3B1-204ENST00000414963 SLC25A24Q6NUK1 477 aa11.15□□□□□ -0.62
SF3B1-204ENST00000414963 C19orf35Q6ZS72 473 aa11.15□□□□□ -0.62
SF3B1-204ENST00000414963 PINX1Q96BK5 328 aaKnown RBP11.15□□□□□ -0.62
SF3B1-204ENST00000414963 ZC4H2Q9NQZ6 224 aa11.15□□□□□ -0.62
SF3B1-204ENST00000414963 LINC00527Q9UJ94 153 aa11.15□□□□□ -0.62
SF3B1-204ENST00000414963 TAAR5O14804 337 aa11.14□□□□□ -0.63
SF3B1-204ENST00000414963 NKX2-5P52952 324 aaPredicted RBP11.14□□□□□ -0.63
SF3B1-204ENST00000414963 DLK1P80370 383 aa11.14□□□□□ -0.63
SF3B1-204ENST00000414963 VWC2Q2TAL6 325 aa11.14□□□□□ -0.63
SF3B1-204ENST00000414963 ARSJQ5FYB0 599 aaPredicted RBP11.14□□□□□ -0.63
SF3B1-204ENST00000414963 OR8G2PQ6IF36 304 aa11.14□□□□□ -0.63
SF3B1-204ENST00000414963 TMUB2Q71RG4 321 aa11.14□□□□□ -0.63
SF3B1-204ENST00000414963 OR1S2Q8NGQ3 325 aa11.14□□□□□ -0.63
SF3B1-204ENST00000414963 BSCL2Q96G97 398 aaPredicted RBP11.14□□□□□ -0.63
SF3B1-204ENST00000414963 THYN1Q9P016 225 aa11.14□□□□□ -0.63
SF3B1-204ENST00000414963 PAIP2BQ9ULR5 123 aaKnown RBP11.14□□□□□ -0.63
SF3B1-204ENST00000414963 I3L2K1 104 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 PRH1P02810 166 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 AP2S1P53680 142 aaPredicted RBP11.13□□□□□ -0.63
SF3B1-204ENST00000414963 SLC35B1P78383 322 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 CD69Q07108 199 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 SLC38A11Q08AI6 406 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 ETFRF1Q6IPR1 90 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 TMEM217Q8N7C4 229 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 RNF152Q8N8N0 203 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 NECAP1Q8NC96 275 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 OR5C1Q8NGR4 320 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 LINC01006Q8NI28 216 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 WIPF2Q8TF74 440 aaPredicted RBP11.13□□□□□ -0.63
SF3B1-204ENST00000414963 FNDC4Q9H6D8 234 aaPredicted RBP11.13□□□□□ -0.63
SF3B1-204ENST00000414963 SLA2Q9H6Q3 261 aa11.13□□□□□ -0.63
SF3B1-204ENST00000414963 RPS10-NUDT3A0A1W2PQS6 291 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 PSMB11A5LHX3 300 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 FAM223BA6NKX1 122 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 K7EIM0 57 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 C4BPBP20851 252 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 PSMB8P28062 276 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 FOXE3Q13461 319 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 FAM223AQ8IWN6 122 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 COMMD1Q8N668 190 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 OR4F5Q8NH21 305 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 VN1R17PQ8TDU5 208 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 MISP3Q96FF7 219 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 ARL6Q9H0F7 186 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 FBXL17Q9UF56 701 aa11.12□□□□□ -0.63
SF3B1-204ENST00000414963 BCL2L11O43521 198 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 DFFBO76075 338 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 NDUFB8O95169 186 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 MT-CO2P00403 227 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 ELANEP08246 267 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 MDKP21741 143 aaPredicted RBP11.11□□□□□ -0.63
SF3B1-204ENST00000414963 OPRK1P41145 380 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 RHOGP84095 191 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 MLANAQ16655 118 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 TEX38Q6PEX7 206 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 SLC16A13Q7RTY0 426 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 CENPVQ7Z7K6 275 aaPredicted RBP11.11□□□□□ -0.63
SF3B1-204ENST00000414963 TMEM116Q8NCL8 245 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 TAF15Q92804 592 aaKnown RBP eCLIP11.11□□□□□ -0.63
SF3B1-204ENST00000414963 USMG5Q96IX5 58 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 ATP5SQ99766 215 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 ARPC5LQ9BPX5 153 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 TMEM147Q9BVK8 224 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 WFDC1Q9HC57 220 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 CYTL1Q9NRR1 136 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 FBXL7Q9UJT9 491 aa11.11□□□□□ -0.63
SF3B1-204ENST00000414963 KANTRA0A1W2PQU2 76 aa11.1□□□□□ -0.63
SF3B1-204ENST00000414963 OR2J3O76001 311 aa11.1□□□□□ -0.63
SF3B1-204ENST00000414963 FCGR2BP31994 310 aaPredicted RBP11.1□□□□□ -0.63
SF3B1-204ENST00000414963 RAB9AP51151 201 aa11.1□□□□□ -0.63
SF3B1-204ENST00000414963 GAMTQ14353 236 aa11.1□□□□□ -0.63
SF3B1-204ENST00000414963 CLINT1Q14677 625 aa11.1□□□□□ -0.63
SF3B1-204ENST00000414963 ZNF329Q86UD4 541 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms