RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 CACNA1GO43497 2377 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 GLRXP35754 106 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 ZP1P60852 638 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 NPIPB3Q92617 1050 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 C5orf66Q9H5L9 145 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 A0A0U1RRA0 63 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 F2Z2F3 143 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 SP9P0CG40 484 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 ZFP36L2P47974 494 aaKnown RBP11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 SHISA4Q96DD7 197 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 ZNF625Q96I27 306 aaPredicted RBP11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 TRGV11A0A075B6L2 103 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 UMODP07911 640 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 ATP5J2P56134 94 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 ZNF114Q8NC26 417 aa11.35□□□□□ -0.59
CCDC88A-204ENST00000413716 PEX11BO96011 259 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 DEFB124Q8NES8 71 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 SVIPQ8NHG7 77 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 PLEKHB2Q96CS7 222 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 HMGA1P17096 107 aaKnown RBP11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 C1orf162Q8NEQ5 155 aaPredicted RBP11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 SCARF2Q96GP6 870 aaPredicted RBP11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 PRADC1Q9BSG0 188 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 CD33P20138 364 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 ADMP35318 185 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 CACNG8Q8WXS5 425 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 UCN2Q96RP3 112 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 SLC50A1Q9BRV3 221 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 DRD3P35462 400 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 FBXL15Q9H469 300 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 SAXO1Q8IYX7 474 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 CRYGNQ8WXF5 182 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 JPT1Q9UK76 154 aa11.34□□□□□ -0.59
CCDC88A-204ENST00000413716 IGHV3-49A0A0A0MS15 119 aa11.33□□□□□ -0.59
CCDC88A-204ENST00000413716 SOCS3O14543 225 aa11.33□□□□□ -0.59
CCDC88A-204ENST00000413716 PRSS41Q7RTY9 318 aa11.33□□□□□ -0.59
CCDC88A-204ENST00000413716 MESP2Q0VG99 397 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 A6NNC1 897 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 IGHV3-23P01764 117 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 C16orf47Q6ZP98 133 aaPredicted RBP11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 IGHV3OR16-13A0A075B7E8 117 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 IGHV3-74A0A0B4J1X5 117 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 NEUROG3Q9Y4Z2 214 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 ARPC1AQ92747 370 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 WNK1Q9H4A3 2382 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 GAGE12BA1L429 117 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 IFI27L1Q96BM0 104 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 RALGAPA2Q2PPJ7 1873 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 FAM27BQ5VT28 67 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 Q6ZNB5 142 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 OTORQ9NRC9 128 aa11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 CARHSP1Q9Y2V2 147 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-204ENST00000413716 A0A1B0GTL3 188 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 MARF1Q9Y4F3 1742 aaKnown RBP11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 BCORQ6W2J9 1755 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 A8MXK9 166 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 IGHV1OR21-1A0A087WYE8 117 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 A0A1W2PPC1 479 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 ERVH48-1M5A8F1 160 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 PDLIM4P50479 330 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 DENND4AQ7Z401 1863 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 PPP1R27Q86WC6 154 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 BRCA1P38398 1863 aaKnown RBP11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 ZIC3O60481 467 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 SPRED2Q7Z698 418 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 TMEM170AQ8WVE7 144 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 DSCR8Q96T75 97 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 UBL5Q9BZL1 73 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 hADV29S1A0JD25 119 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 TCRAP04437 139 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 C1QL3Q5VWW1 255 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 TMEM54Q969K7 222 aa11.32□□□□□ -0.6
CCDC88A-204ENST00000413716 C1QTNF9P0C862 333 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 FOXH1O75593 365 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 FABP5P3A8MUU1 101 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 CD300EQ496F6 205 aaPredicted RBP11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 TEX43Q6ZNM6 134 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 ITLN1Q8WWA0 313 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 RNASE7Q9H1E1 156 aaKnown RBP11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 TET1Q8NFU7 2136 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 A0A087WX48 190 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 GAGE12JA6NER3 117 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 CHKB-CPT1BH3BT56 60 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 COL9A1P20849 921 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 RBM3P98179 157 aaKnown RBP11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 GAGE1Q13065 139 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 GAGE4Q13068 117 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 GAGE5Q13069 117 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 GAGE6Q13070 117 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 ZNRF1Q8ND25 227 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 MED12LQ86YW9 2145 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 SLC25A38Q96DW6 304 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 IGHV3-35A0A0C4DH35 117 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 CT62P0C5K7 136 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 CCL1P22362 96 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 MAFAQ8NHW3 353 aaPredicted RBP11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 PLPPR1Q8TBJ4 325 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 SBF2Q86WG5 1849 aa11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 HELZP42694 1942 aaKnown RBP11.31□□□□□ -0.6
CCDC88A-204ENST00000413716 RHOGP84095 191 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms