RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CLPSL1A2RUU4 121 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 HAX1O00165 279 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 CORTO00230 105 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 OR2J3O76001 311 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 TRGV3P03979 118 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 SULT1A1P50225 295 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 AP2S1P53680 142 aaPredicted RBP14.13□□□□□ -0.15
SDC1-203ENST00000403076 EWSR1Q01844 656 aaKnown RBP eCLIP14.13□□□□□ -0.15
SDC1-203ENST00000403076 C10orf99Q6UWK7 81 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 KLHDC1Q8N7A1 406 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 TMEM217Q8N7C4 229 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 OR10P1Q8NGE3 313 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 HYLS1Q96M11 299 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 FBXL7Q9UJT9 491 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 TNFSF18Q9UNG2 199 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 C2CD3Q4AC94 2353 aa14.13□□□□□ -0.15
SDC1-203ENST00000403076 IGLV11-55A0A075B6I3 123 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 H3BUA1 57 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 IGHG4P01861 327 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 MDKP21741 143 aaPredicted RBP14.12□□□□□ -0.15
SDC1-203ENST00000403076 OPRK1P41145 380 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 TPPP2P59282 170 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 RHOGP84095 191 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 NHLH2Q02577 135 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 OR5AU1Q8NGC0 362 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 RNASEH2CQ8TDP1 164 aaKnown RBP14.12□□□□□ -0.15
SDC1-203ENST00000403076 PPP1R14BQ96C90 147 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 FANCD2OSQ96PS1 177 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 MFFQ9GZY8 342 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 DMRT1Q9Y5R6 373 aa14.12□□□□□ -0.15
SDC1-203ENST00000403076 IGHV3-21A0A0B4J1V1 117 aa14.11□□□□□ -0.15
SDC1-203ENST00000403076 HMSDA8MTL9 139 aa14.11□□□□□ -0.15
SDC1-203ENST00000403076 SCAF4O95104 1147 aaKnown RBP14.11□□□□□ -0.15
SDC1-203ENST00000403076 IGLV1-40P01703 118 aa14.11□□□□□ -0.15
SDC1-203ENST00000403076 PRIMA1Q86XR5 153 aa14.11□□□□□ -0.15
SDC1-203ENST00000403076 COMMD1Q8N668 190 aa14.11□□□□□ -0.15
SDC1-203ENST00000403076 SLA2Q9H6Q3 261 aa14.11□□□□□ -0.15
SDC1-203ENST00000403076 A0A1B0GUS0 222 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 TMEM89A2RUT3 159 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 MT-CO2P00403 227 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 ELANEP08246 267 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 HBG1P69891 147 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 HBG2P69892 147 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 DEFA5Q01523 94 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 BAXQ07812 192 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 FOXE3Q13461 319 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 EXOSC2Q13868 293 aaKnown RBP14.1□□□□□ -0.15
SDC1-203ENST00000403076 LCNL1Q6ZST4 164 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 ACOT7LQ6ZUV0 252 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 NECAP1Q8NC96 275 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 AQP10Q96PS8 301 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 KLK15Q9H2R5 256 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 HSPB11Q9Y547 144 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 NF1P21359 2839 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 TRBV9A0A0B4J1U6 114 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 RPS10-NUDT3A0A1W2PQS6 291 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 PMS2P5A8MQ11 134 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 NDUFB8O95169 186 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 EIF2B2P49770 351 aaKnown RBP14.1□□□□□ -0.15
SDC1-203ENST00000403076 RAB9AP51151 201 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 ATP5G2Q06055 141 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 SLC38A11Q08AI6 406 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 ARL16Q0P5N6 197 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 FOXL1Q12952 345 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 PVRIGQ6DKI7 326 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 ETFRF1Q6IPR1 90 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 HAPLN4Q86UW8 402 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 LILRB2Q8N423 598 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 OR4X2Q8NGF9 303 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 OR1S2Q8NGQ3 325 aa14.1□□□□□ -0.15
SDC1-203ENST00000403076 SMCO3A2RU48 225 aa14.09□□□□□ -0.15
SDC1-203ENST00000403076 RNF222A6NCQ9 220 aa14.09□□□□□ -0.15
SDC1-203ENST00000403076 FAM223BA6NKX1 122 aa14.09□□□□□ -0.15
SDC1-203ENST00000403076 IGHV3-48P01763 117 aa14.09□□□□□ -0.15
SDC1-203ENST00000403076 PSMB8P28062 276 aa14.09□□□□□ -0.15
SDC1-203ENST00000403076 S100A11P31949 105 aa14.09□□□□□ -0.15
SDC1-203ENST00000403076 CD69Q07108 199 aa14.09□□□□□ -0.15
SDC1-203ENST00000403076 MLANAQ16655 118 aa14.09□□□□□ -0.15
SDC1-203ENST00000403076 FAM223AQ8IWN6 122 aa14.09□□□□□ -0.15
SDC1-203ENST00000403076 OR5C1Q8NGR4 320 aa14.09□□□□□ -0.15
SDC1-203ENST00000403076 SMIM3Q9BZL3 60 aa14.09□□□□□ -0.15
SDC1-203ENST00000403076 SETD2Q9BYW2 2564 aaPredicted RBP14.09□□□□□ -0.15
SDC1-203ENST00000403076 CUBNO60494 3623 aa14.08□□□□□ -0.16
SDC1-203ENST00000403076 BRI3O95415 125 aa14.08□□□□□ -0.16
SDC1-203ENST00000403076 HNRNPCP07910 306 aaKnown RBP eCLIP14.08□□□□□ -0.16
SDC1-203ENST00000403076 GPX4P36969 197 aaPredicted RBP14.08□□□□□ -0.16
SDC1-203ENST00000403076 OR2F1Q13607 317 aa14.08□□□□□ -0.16
SDC1-203ENST00000403076 CLINT1Q14677 625 aa14.08□□□□□ -0.16
SDC1-203ENST00000403076 C15orf32Q32M92 178 aa14.08□□□□□ -0.16
SDC1-203ENST00000403076 SLC16A13Q7RTY0 426 aa14.08□□□□□ -0.16
SDC1-203ENST00000403076 BSCL2Q96G97 398 aaPredicted RBP14.08□□□□□ -0.16
SDC1-203ENST00000403076 SLC35E1Q96K37 410 aa14.08□□□□□ -0.16
SDC1-203ENST00000403076 FNDC4Q9H6D8 234 aaPredicted RBP14.08□□□□□ -0.16
SDC1-203ENST00000403076 S4R3C0 116 aa14.08□□□□□ -0.16
SDC1-203ENST00000403076 A0A0G2JLM5 398 aa14.07□□□□□ -0.16
SDC1-203ENST00000403076 BOLA2-SMG1P6H3BVE0 249 aa14.07□□□□□ -0.16
SDC1-203ENST00000403076 I3L2K1 104 aa14.07□□□□□ -0.16
SDC1-203ENST00000403076 K7EIM0 57 aa14.07□□□□□ -0.16
SDC1-203ENST00000403076 RPLP1P05386 114 aaKnown RBP14.07□□□□□ -0.16
SDC1-203ENST00000403076 NKX2-5P52952 324 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms