RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 MKI67P46013 3256 aaKnown RBP2.9□□□□□ -1.95
HMGB1-204ENST00000399489 C1orf196B1AJZ1 125 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 FSTL3O95633 263 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 CRISP2P16562 243 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 RPS4Y1P22090 263 aaKnown RBP2.9□□□□□ -1.95
HMGB1-204ENST00000399489 CXCL5P42830 114 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 CXCL12P48061 93 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 LINC00313P59037 77 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 GABARAPL2P60520 117 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 PSG7Q13046 419 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 ELOCQ15369 112 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 TMEM183BQ1AE95 376 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 GLYATL3Q5SZD4 288 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 MRPL2Q5T653 305 aaKnown RBP2.9□□□□□ -1.95
HMGB1-204ENST00000399489 HRCT1Q6UXD1 115 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 ZNF695Q8IW36 515 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 TMEM183AQ8IXX5 376 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 SLC25A29Q8N8R3 303 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 NUP35Q8NFH5 326 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 FAM57AQ8TBR7 257 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 TSPAN32Q96QS1 320 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 MGLLQ99685 303 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 MED28Q9H204 178 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 OR5AC2Q9NZP5 309 aa2.9□□□□□ -1.95
HMGB1-204ENST00000399489 ROBO3Q96MS0 1386 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 WNK3Q9BYP7 1800 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 B4DEV8 164 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 M0R381 172 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 BCL2L11O43521 198 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 SNAPC5O75971 98 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 APOMO95445 188 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 IFNA7P01567 189 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 APODP05090 189 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 ADRA2AP08913 450 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 S100A2P29034 98 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 GABRA3P34903 492 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 ATP5G3P48201 142 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 LOXL1Q08397 574 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-204ENST00000399489 MPV17L2Q567V2 206 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 GLT8D1Q68CQ7 371 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 GUSBP11Q6P575 273 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 GLIPR1L1Q6UWM5 242 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 UNQ9165/PRO28630Q6UXU0 137 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 ZNF440Q8IYI8 595 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 ZNF664Q8N3J9 261 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 OR11G2Q8NGC1 345 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 OR52R1Q8NGF1 315 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 OR51A4Q8NGJ6 313 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 OR51T1Q8NGJ9 327 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 C15orf40Q8WUR7 153 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 TMEM106AQ96A25 262 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 AP1S3Q96PC3 154 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 OPRPNQ99935 248 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-204ENST00000399489 SOSTQ9BQB4 213 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 MRPL57Q9BQC6 102 aaKnown RBP2.89□□□□□ -1.95
HMGB1-204ENST00000399489 COMMD5Q9GZQ3 224 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 FGF23Q9GZV9 251 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-204ENST00000399489 NAT8Q9UHE5 227 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 BOKQ9UMX3 212 aaPredicted RBP2.89□□□□□ -1.95
HMGB1-204ENST00000399489 COQ4Q9Y3A0 265 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 BTAF1O14981 1849 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 SZT2Q5T011 3432 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 KCPQ6ZWJ8 1503 aa2.89□□□□□ -1.95
HMGB1-204ENST00000399489 IGHV3-72A0A0B4J1Y9 119 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 IGHV1OR15-9A0A0B4J2B8 117 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 PNMA8CA0A1B0GUJ8 204 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 DHRS12A0PJE2 317 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 CLDN25C9JDP6 229 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 C9JQL5 133 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 UBFD1O14562 309 aaKnown RBP2.88□□□□□ -1.95
HMGB1-204ENST00000399489 OVOL1O14753 267 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 DPM2O94777 84 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 IGHV3-11P01762 117 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 PAEPP09466 180 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 AKAIN1P0CW23 69 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 BCL2P10415 239 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 PPIBP23284 216 aaKnown RBP2.88□□□□□ -1.95
HMGB1-204ENST00000399489 ATP6V0CP27449 155 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 BRS3P32247 399 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 CCR2P41597 374 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 GUCA1AP43080 201 aaPredicted RBP2.88□□□□□ -1.95
HMGB1-204ENST00000399489 LPAR6P43657 344 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 SLC38A11Q08AI6 406 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 BCL2L15Q5TBC7 163 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 FAAP20Q6NZ36 180 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 WDR59Q6PJI9 974 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 PDPNQ86YL7 162 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 ZNF525Q8N782 197 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 ABHD14BQ96IU4 210 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 DERL3Q96Q80 235 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 NMNAT3Q96T66 252 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 NRTNQ99748 197 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 CXorf21Q9HAI6 301 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 PDFQ9HBH1 243 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 SOX21Q9Y651 276 aaPredicted RBP2.88□□□□□ -1.95
HMGB1-204ENST00000399489 TUBGCP6Q96RT7 1819 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 QRICH2Q9H0J4 1663 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 NFAT5O94916 1531 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 BRCA2P51587 3418 aa2.88□□□□□ -1.95
HMGB1-204ENST00000399489 AKAP12Q02952 1782 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms