RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 LINC00469Q8N7U9 141 aa11.9□□□□□ -0.5
PCDHA11-201ENST00000398640 COPS9Q8WXC6 57 aa11.9□□□□□ -0.5
PCDHA11-201ENST00000398640 ALKBH7Q9BT30 221 aaPredicted RBP11.9□□□□□ -0.5
PCDHA11-201ENST00000398640 MRPS16Q9Y3D3 137 aaKnown RBP11.9□□□□□ -0.5
PCDHA11-201ENST00000398640 UCP3P55916 312 aa11.9□□□□□ -0.5
PCDHA11-201ENST00000398640 HBBP68871 147 aa11.9□□□□□ -0.5
PCDHA11-201ENST00000398640 NBR2O15453 112 aa11.9□□□□□ -0.51
PCDHA11-201ENST00000398640 DNAL4O96015 105 aa11.9□□□□□ -0.51
PCDHA11-201ENST00000398640 MALP21145 153 aa11.9□□□□□ -0.51
PCDHA11-201ENST00000398640 CBLN1P23435 193 aa11.9□□□□□ -0.51
PCDHA11-201ENST00000398640 GATAD1Q8WUU5 269 aa11.9□□□□□ -0.51
PCDHA11-201ENST00000398640 RP1P56715 2156 aa11.9□□□□□ -0.51
PCDHA11-201ENST00000398640 LDLRAD4O15165 306 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 VGLL1Q99990 258 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 SLC17A3O00476 420 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 C2orf68Q2NKX9 166 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 A0A0G2JK05 382 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 PLP1P60201 277 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 JOSD1Q15040 202 aaPredicted RBP11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 REC114Q7Z4M0 266 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 LINC00312Q9Y6C7 94 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 CXorf65A6NEN9 183 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 IQCF6A8MYZ5 107 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 DANCRP0C864 163 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 PMCHL1Q16048 86 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 IGFL3Q6UXB1 125 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 LHFPL4Q7Z7J7 247 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 TMEM167AQ8TBQ9 72 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 H7C1H1 209 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 PEX7O00628 323 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 ZNF585BQ52M93 769 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 BRD3OSQ6XYD6 125 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 C2orf88Q9BSF0 95 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 C1QTNF5Q9BXJ0 243 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 CRIM1Q9NZV1 1036 aa11.89□□□□□ -0.51
PCDHA11-201ENST00000398640 SCO2A0A1W2PP80 73 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 IGHG3P01860 377 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 LEMD1Q68G75 181 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 SLC25A34Q6PIV7 304 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 TMEM136Q6ZRR5 245 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 VMO1Q7Z5L0 202 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 OR52E5Q8NH55 327 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 KCNS1Q96KK3 526 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 MBD3L4A6NDZ8 208 aaPredicted RBP11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 MBD3L3A6NE82 208 aaPredicted RBP11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 MBD3L5A6NJ08 208 aaPredicted RBP11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 KLRD1Q13241 179 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 COTL1Q14019 142 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 C12orf54Q6X4T0 127 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 MBD3L2Q8NHZ7 208 aaPredicted RBP11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 ICE1Q9Y2F5 2266 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 A0A087WV48 116 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 SAA2-SAA4A0A096LPE2 208 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 SAA2P0DJI9 122 aaPredicted RBP11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 ZP1P60852 638 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 PRELID3AQ96N28 172 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 MPTX1A8MV57 137 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 WNT2P09544 360 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 MEF2CQ06413 473 aaPredicted RBP11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 MIR17HGQ75NE6 70 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 MAPK1IP1LQ8NDC0 245 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 SDF2L1Q9HCN8 221 aa11.88□□□□□ -0.51
PCDHA11-201ENST00000398640 SNAI2O43623 268 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 DTX1Q86Y01 620 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 SAA1P0DJI8 122 aaPredicted RBP11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 MYOD1P15172 320 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 LAIR2Q6ISS4 152 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 PLPPR1Q8TBJ4 325 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 HIST1H2BAQ96A08 127 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 RPRMQ9NS64 109 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 TBL2Q9Y4P3 447 aaKnown RBP11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 NAT1P18440 290 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 ZNF672Q499Z4 452 aaPredicted RBP11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 PAPPA-AS1Q5QFB9 102 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 CFAP161Q6P656 301 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 SCGB3A1Q96QR1 104 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 CD7P09564 240 aa11.87□□□□□ -0.51
PCDHA11-201ENST00000398640 ATP5IP56385 69 aaPredicted RBP11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 CACNA1IQ9P0X4 2223 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 TRGV4A0A0C4DH28 118 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 SHISA3A0PJX4 238 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 CRPP02741 224 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 RPL35AP18077 110 aaKnown RBP11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 ERVK11-1P61568 191 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 ERASQ7Z444 233 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 Q9H3A6 140 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 RHOGP84095 191 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 GGNQ86UU5 652 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 TMEM133Q9H2Q1 129 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 NUP210Q8TEM1 1887 aaPredicted RBP11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 NDUFA3O95167 84 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 APOHP02749 345 aaPredicted RBP11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 ZNF506Q5JVG8 444 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 ZNF414Q96IQ9 312 aa11.86□□□□□ -0.51
PCDHA11-201ENST00000398640 CDX1P47902 265 aaPredicted RBP11.85□□□□□ -0.51
PCDHA11-201ENST00000398640 GNG5P63218 68 aa11.85□□□□□ -0.51
PCDHA11-201ENST00000398640 PLSCR2Q9NRY7 297 aa11.85□□□□□ -0.51
PCDHA11-201ENST00000398640 ATP5G3P48201 142 aa11.85□□□□□ -0.51
PCDHA11-201ENST00000398640 OR5AN1Q8NGI8 311 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms