RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 CSPG4Q6UVK1 2322 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 PSPNO60542 156 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 RND3P61587 244 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 TBR1Q16650 682 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 LCNL1Q6ZST4 164 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 SCN1AP35498 2009 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 RALGAPA1Q6GYQ0 2036 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 PAX4O43316 350 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 CD5P06127 495 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 PAX2Q02962 417 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 MORN3Q6PF18 240 aaPredicted RBP6.03□□□□□ -1.44
UPF2-203ENST00000397053 SDHCQ99643 169 aaPredicted RBP6.03□□□□□ -1.44
UPF2-203ENST00000397053 Q9H3A6 140 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 MUC6Q6W4X9 2439 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 J3QKU1 62 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 NAPSAO96009 420 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 LURAP1LQ8IV03 231 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 EDA2RQ9HAV5 297 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 A0A1B0GW15 77 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 NDUFA3O95167 84 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 LHBP01229 141 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 HBDP02042 147 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 CELA3BP08861 270 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 DEFB130BP0DP73 79 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 DEFB130AP0DP74 79 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 GATA2P23769 480 aaPredicted RBP6.02□□□□□ -1.45
UPF2-203ENST00000397053 CTHRC1Q96CG8 243 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 IMMP1LQ96LU5 166 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 NRN1Q9NPD7 142 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 E9PQ18 207 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 OVOL1O14753 267 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 LDLRAD4O15165 306 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 IGHV3-53P01767 116 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 ZNF250P15622 560 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 CBLN1P23435 193 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 BRD3OSQ6XYD6 125 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 C9orf62Q8N4C0 152 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 PIP4P2Q8N4L2 257 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 OR2K2Q8NGT1 345 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 RCHY1Q96PM5 261 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 PSMG3Q9BT73 122 aaPredicted RBP6.02□□□□□ -1.45
UPF2-203ENST00000397053 SORL1Q92673 2214 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 RGPD5Q99666 1765 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 SHANK1Q9Y566 2161 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 IQCF6A8MYZ5 107 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 TYMSP04818 313 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 LINC00614P0C842 121 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 SLC25A16P16260 332 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 TEX38Q6PEX7 206 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 FMC1Q96HJ9 113 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 RPP21Q9H633 154 aaKnown RBP6.02□□□□□ -1.45
UPF2-203ENST00000397053 TIAM2Q8IVF5 1701 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 ZNF638Q14966 1978 aaKnown RBP6.02□□□□□ -1.45
UPF2-203ENST00000397053 A0A0G2JMM0 328 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 A0A1W2PPB8 328 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 A0A1W2PRS3 328 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 KIR3DP1A8MWS1 328 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 SMIM10L1P0DMW3 83 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 IGLV3-21P80748 117 aaPredicted RBP6.02□□□□□ -1.45
UPF2-203ENST00000397053 C6orf226Q5I0X4 101 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 HAPLN4Q86UW8 402 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 SMIM10Q96HG1 83 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 SELENOKQ9Y6D0 94 aa6.02□□□□□ -1.45
UPF2-203ENST00000397053 CXorf65A6NEN9 183 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 SRSF6Q13247 344 aaKnown RBP6.01□□□□□ -1.45
UPF2-203ENST00000397053 OR5A1Q8NGJ0 315 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 UBE2E2Q96LR5 201 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 PARD6GQ9BYG4 376 aaPredicted RBP6.01□□□□□ -1.45
UPF2-203ENST00000397053 C5orf66Q9H5L9 145 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 PLAC1Q9HBJ0 212 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 CHD2O14647 1828 aaKnown RBP6.01□□□□□ -1.45
UPF2-203ENST00000397053 IGKV1D-42A0A075B6H8 117 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 TMEM14DPA8MWL7 114 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 PPIFP30405 207 aaKnown RBP6.01□□□□□ -1.45
UPF2-203ENST00000397053 LHX2P50458 406 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 EGR4Q05215 589 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 IRF3Q14653 427 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 TMEM144Q7Z5S9 345 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 MS4A6AQ9H2W1 248 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 ZNF257Q9Y2Q1 563 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 BTAF1O14981 1849 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 ANKRD36CQ5JPF3 1778 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 SCN11AQ9UI33 1791 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 TRBV5-7A0A0A0MS05 114 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 LINC00587B1AMM8 73 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 TMEM187Q14656 261 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 SP5Q6BEB4 398 aaPredicted RBP6.01□□□□□ -1.45
UPF2-203ENST00000397053 TRAF4Q9BUZ4 470 aaPredicted RBP6.01□□□□□ -1.45
UPF2-203ENST00000397053 LAMTOR3Q9UHA4 124 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 TMEM8BA6NDV4 472 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 UPK2O00526 184 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 SNAI2O43623 268 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 ASPHD2Q6ICH7 369 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 ZNF329Q86UD4 541 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 RCC1LQ96I51 464 aaKnown RBP6.01□□□□□ -1.45
UPF2-203ENST00000397053 OTORQ9NRC9 128 aa6.01□□□□□ -1.45
UPF2-203ENST00000397053 MED12Q93074 2177 aa6□□□□□ -1.45
UPF2-203ENST00000397053 SAA2-SAA4A0A096LPE2 208 aa6□□□□□ -1.45
UPF2-203ENST00000397053 SAA2P0DJI9 122 aaPredicted RBP6□□□□□ -1.45
UPF2-203ENST00000397053 FUT5Q11128 374 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms