RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 FGF11Q92914 225 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 TFF2Q03403 129 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 CRYBA2P53672 197 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 ARPC1AQ92747 370 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 FOXL2P58012 376 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 SAMD5Q5TGI4 173 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 ASCL2Q99929 193 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 GNB1LQ9BYB4 327 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 FBXL7Q9UJT9 491 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 RPL23P62829 140 aaKnown RBP11.81□□□□□ -0.52
COL4A3-202ENST00000396578 GAGE13Q4V321 117 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 NXT2Q9NPJ8 142 aaKnown RBP11.81□□□□□ -0.52
COL4A3-202ENST00000396578 KLF4O43474 513 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 SMRP1Q8NCR6 262 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 OTORQ9NRC9 128 aa11.81□□□□□ -0.52
COL4A3-202ENST00000396578 LINC00587B1AMM8 73 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 PATE3B3GLJ2 98 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 TRGV2A0A075B6R0 118 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 TRAV2A0A0B4J234 112 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 J3QW42 95 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 IGKV1D-33P01593 117 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 IGKV1-33P01594 117 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 ERVK11-1P61568 191 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 CHCHD1Q96BP2 118 aaKnown RBP11.8□□□□□ -0.52
COL4A3-202ENST00000396578 WFDC6Q9BQY6 131 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 C21orf62Q9NYP8 219 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 ARFGEF3Q5TH69 2177 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 SEC11AP67812 179 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 CRPP02741 224 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 A0A1W2PQF6 199 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 IGKCP01834 107 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 MIR17HGQ75NE6 70 aa11.8□□□□□ -0.52
COL4A3-202ENST00000396578 CHTOPQ9Y3Y2 248 aaKnown RBP11.8□□□□□ -0.52
COL4A3-202ENST00000396578 UCP1P25874 307 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 PRSS53Q2L4Q9 553 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 ORAOV1Q8WV07 137 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 C5orf67F2Z3F1 127 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 ATXN7O15265 892 aaPredicted RBP11.79□□□□□ -0.52
COL4A3-202ENST00000396578 ATXN8Q156A1 80 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 CYSLTR1Q9Y271 337 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 ORMDL2Q53FV1 153 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 SPTA1P02549 2419 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 MSGN1A6NI15 193 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 CD7P09564 240 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 FABP5P3A8MUU1 101 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 UBE2CO00762 179 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 RTBDNQ9BSG5 229 aaPredicted RBP11.79□□□□□ -0.52
COL4A3-202ENST00000396578 LINC01590Q5TEZ4 76 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 S4R3C0 116 aa11.79□□□□□ -0.52
COL4A3-202ENST00000396578 M0R2P5 195 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 BRCA1P38398 1863 aaKnown RBP11.78□□□□□ -0.52
COL4A3-202ENST00000396578 CCL20P78556 96 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 FAM57AQ8TBR7 257 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 FBXL15Q9H469 300 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 PILRBQ9UKJ0 227 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 LOC101059948A0A1B0GTJ6 334 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 SPRED2Q7Z698 418 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 TMEM86BQ8N661 226 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 PPP1R27Q86WC6 154 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 GAGE2BQ13066 116 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 GAGE2EQ4V326 116 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 ZNF562Q6V9R5 426 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 Q6ZT83 130 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 RTN4RL2Q86UN3 420 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 JMJD8Q96S16 334 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 SEPSECSQ9HD40 501 aaKnown RBP11.78□□□□□ -0.52
COL4A3-202ENST00000396578 GAGE2DQ9UEU5 116 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 IGKV1D-42A0A075B6H8 117 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 A0A1W2PRS3 328 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 EGR4Q05215 589 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 FAM89BQ8N5H3 189 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 GTF3C1Q12789 2109 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 PPBPP02775 128 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 APOBEC3AP31941 199 aaPredicted RBP11.78□□□□□ -0.52
COL4A3-202ENST00000396578 TMEM155Q4W5P6 130 aa11.78□□□□□ -0.52
COL4A3-202ENST00000396578 IGHV3OR16-10A0A075B7F0 116 aa11.77□□□□□ -0.52
COL4A3-202ENST00000396578 COX6A1P12074 109 aa11.77□□□□□ -0.52
COL4A3-202ENST00000396578 HSD52Q0P140 79 aa11.77□□□□□ -0.52
COL4A3-202ENST00000396578 FHL5Q5TD97 284 aa11.77□□□□□ -0.52
COL4A3-202ENST00000396578 C1orf53Q5VUE5 145 aa11.77□□□□□ -0.52
COL4A3-202ENST00000396578 CLEC19AQ6UXS0 136 aa11.77□□□□□ -0.52
COL4A3-202ENST00000396578 DPM3Q9P2X0 92 aa11.77□□□□□ -0.52
COL4A3-202ENST00000396578 PROB1E7EW31 1015 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 C17orf98A8MV24 154 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 LGALS1P09382 135 aaKnown RBP11.77□□□□□ -0.53
COL4A3-202ENST00000396578 HIST1H2BKO60814 126 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 HIST1H2BJP06899 126 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 HIST1H2BOP23527 126 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 HIST1H2BBP33778 126 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 HIST1H2BDP58876 126 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 HIST1H2BCP62807 126 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 ZNF124Q15973 351 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 HIST2H2BEQ16778 126 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.77□□□□□ -0.53
COL4A3-202ENST00000396578 HIST1H2BHQ93079 126 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 MGST2Q99735 147 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 HIST1H2BNQ99877 126 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 HIST1H2BMQ99879 126 aa11.77□□□□□ -0.53
COL4A3-202ENST00000396578 ZNF703Q9H7S9 590 aaPredicted RBP11.77□□□□□ -0.53
COL4A3-202ENST00000396578 GLRXP35754 106 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms