RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 Q6P435 159 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 ZNF645Q8N7E2 425 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 UNC79Q9P2D8 2635 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 OR7C2O60412 319 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 CD99P14209 185 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 RUNX1Q01196 453 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 MEF2CQ06413 473 aaPredicted RBP8.44□□□□□ -1.06
COL6A3-205ENST00000392004 DIAPH2-AS1Q14236 149 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 ADIRFQ15847 76 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 OR2T6Q8NHC8 308 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 DTD1Q8TEA8 209 aa8.44□□□□□ -1.06
COL6A3-205ENST00000392004 SCGB2A2Q13296 93 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 JOSD1Q15040 202 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-205ENST00000392004 CT45A1Q5HYN5 189 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 OR4C13Q8NGP0 309 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 CT45A3Q8NHU0 189 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 NDUFAF3Q9BU61 184 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 XKRY2A2RUG3 117 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 PPP5D1E7EU14 171 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 MYOD1P15172 320 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 LOXP28300 417 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-205ENST00000392004 LYZP61626 148 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 NSUN5P1Q3KNT7 163 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 ZNF880Q6PDB4 577 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 DPPA3Q6W0C5 159 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 C11orf53Q8IXP5 236 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 TMEM183AQ8IXX5 376 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 OR2T10Q8NGZ9 312 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 J3KRW8 73 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 OR2J3O76001 311 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 GOSR1O95249 250 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 RAB4AP20338 218 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 MC5RP33032 325 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 OR1L8Q8NGR8 309 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 SLC25A33Q9BSK2 321 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 CTDSP1Q9GZU7 261 aa8.43□□□□□ -1.06
COL6A3-205ENST00000392004 LYRM2Q9NU23 88 aaPredicted RBP8.43□□□□□ -1.06
COL6A3-205ENST00000392004 TNRC6BQ9UPQ9 1833 aaKnown RBP8.43□□□□□ -1.06
COL6A3-205ENST00000392004 CHD3Q12873 2000 aaKnown RBP8.42□□□□□ -1.06
COL6A3-205ENST00000392004 RELNP78509 3460 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 LOC102723971A0A1B0GUV8 181 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 OR1P1Q8NH06 330 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 SYNGR2O43760 224 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 HTN1P15515 57 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 ZNF66Q6ZN08 573 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 NECAP1Q8NC96 275 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 OR4D5Q8NGN0 318 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 TMEM18Q96B42 140 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 ATP5SQ99766 215 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 IGHV3-66A0A0C4DH42 116 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 NPFFO15130 113 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 GCGP01275 180 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 LOXL3P58215 753 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 TAS2R30P59541 319 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 DAZAP2Q15038 168 aaPredicted RBP8.42□□□□□ -1.06
COL6A3-205ENST00000392004 BATFQ16520 125 aa8.42□□□□□ -1.06
COL6A3-205ENST00000392004 FOXI3A8MTJ6 420 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-205ENST00000392004 H7BYZ3 331 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 HPRT1P00492 218 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 TPPP2P59282 170 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 H1FOOQ8IZA3 346 aaPredicted RBP8.41□□□□□ -1.06
COL6A3-205ENST00000392004 JKAMPQ9P055 326 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 STAB1Q9NY15 2570 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 SCGB1D1O95968 90 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 IGHV4-38-2P0DP08 117 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 BCL2P10415 239 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 ZFP36P26651 326 aaKnown RBP8.41□□□□□ -1.06
COL6A3-205ENST00000392004 UCP3P55916 312 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 LCNL1Q6ZST4 164 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 SMIM7Q9BQ49 75 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 THYN1Q9P016 225 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 A6NJY4 79 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 GPR146Q96CH1 333 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 SLC39A9Q9NUM3 307 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 TMEM242Q9NWH2 141 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 CLEC5AQ9NY25 188 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 RABAC1Q9UI14 185 aa8.41□□□□□ -1.06
COL6A3-205ENST00000392004 A0A1B0GU03 582 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 A8MWP6 167 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 KIAA1324LA8MWY0 1029 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-205ENST00000392004 M0QZ24 198 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 M0R143 59 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 LMO1P25800 156 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 UBE2G2P60604 165 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 NUTF2P61970 127 aaKnown RBP8.4□□□□□ -1.06
COL6A3-205ENST00000392004 IQCJQ1A5X6 159 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 BEND2Q8NDZ0 799 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 OR4X1Q8NH49 305 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 TMEM222Q9H0R3 208 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 SRD5A3Q9H8P0 318 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 ITPR2Q14571 2701 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 TRBV24-1A0A075B6N3 115 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 ZNF737O75373 536 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 PF4P02776 101 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 TRGV3P03979 118 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 IGKV1-16P04430 117 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 ITPR1Q14643 2758 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 OR10G4Q8NGN3 311 aa8.4□□□□□ -1.06
COL6A3-205ENST00000392004 ZNF785A8K8V0 405 aa8.4□□□□□ -1.07
COL6A3-205ENST00000392004 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms