RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SP6Q3SY56 376 aa16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 LAMTOR1Q6IAA8 161 aa16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 MARCH1Q8TCQ1 289 aa16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 DYNC2LI1Q8TCX1 351 aa16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 SMIM4Q8WVI0 70 aa16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 CCDC59Q9P031 241 aaKnown RBP16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 CTDSPLO15194 276 aa16.19■□□□□ 0.18
CCDC28B-201ENST00000373602 NUPL2O15504 423 aaKnown RBP16.19■□□□□ 0.18
CCDC28B-201ENST00000373602 B3GALNT1O75752 331 aa16.19■□□□□ 0.18
CCDC28B-201ENST00000373602 TMBIM6P55061 237 aa16.19■□□□□ 0.18
CCDC28B-201ENST00000373602 RELQ04864 619 aaPredicted RBP16.19■□□□□ 0.18
CCDC28B-201ENST00000373602 TRIM16LQ309B1 348 aa16.19■□□□□ 0.18
CCDC28B-201ENST00000373602 SPINK9Q5DT21 86 aa16.19■□□□□ 0.18
CCDC28B-201ENST00000373602 DIRAS2Q96HU8 199 aa16.19■□□□□ 0.18
CCDC28B-201ENST00000373602 RABL2AQ9UBK7 228 aaPredicted RBP16.19■□□□□ 0.18
CCDC28B-201ENST00000373602 RABL2BQ9UNT1 228 aa16.19■□□□□ 0.18
CCDC28B-201ENST00000373602 ST8SIA3O43173 380 aa16.18■□□□□ 0.18
CCDC28B-201ENST00000373602 ZNF207O43670 478 aaKnown RBP16.18■□□□□ 0.18
CCDC28B-201ENST00000373602 FAAP20Q6NZ36 180 aa16.18■□□□□ 0.18
CCDC28B-201ENST00000373602 SLC35G3Q8N808 338 aa16.18■□□□□ 0.18
CCDC28B-201ENST00000373602 PINX1Q96BK5 328 aaKnown RBP16.18■□□□□ 0.18
CCDC28B-201ENST00000373602 GGTLC1Q9BX51 225 aa16.18■□□□□ 0.18
CCDC28B-201ENST00000373602 SMPXQ9UHP9 88 aa16.18■□□□□ 0.18
CCDC28B-201ENST00000373602 LOC102724200A0A096LPH7 203 aaPredicted RBP16.17■□□□□ 0.18
CCDC28B-201ENST00000373602 IFNA17P01571 189 aa16.17■□□□□ 0.18
CCDC28B-201ENST00000373602 IGHV3-48P01763 117 aa16.17■□□□□ 0.18
CCDC28B-201ENST00000373602 IL18Q14116 193 aa16.17■□□□□ 0.18
CCDC28B-201ENST00000373602 PVRIGQ6DKI7 326 aa16.17■□□□□ 0.18
CCDC28B-201ENST00000373602 OR10C1Q96KK4 312 aa16.17■□□□□ 0.18
CCDC28B-201ENST00000373602 RTBDNQ9BSG5 229 aaPredicted RBP16.17■□□□□ 0.18
CCDC28B-201ENST00000373602 NXF2Q9GZY0 626 aaKnown RBP16.17■□□□□ 0.18
CCDC28B-201ENST00000373602 A0A0G2JRQ6 117 aa16.16■□□□□ 0.18
CCDC28B-201ENST00000373602 DISC1C4P0D8 188 aa16.16■□□□□ 0.18
CCDC28B-201ENST00000373602 SNCAP37840 140 aa16.16■□□□□ 0.18
CCDC28B-201ENST00000373602 SURF2Q15527 256 aaPredicted RBP16.16■□□□□ 0.18
CCDC28B-201ENST00000373602 RRNAD1Q96FB5 475 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-201ENST00000373602 PDCD10Q9BUL8 212 aa16.16■□□□□ 0.18
CCDC28B-201ENST00000373602 TMEM222Q9H0R3 208 aa16.16■□□□□ 0.18
CCDC28B-201ENST00000373602 C14orf166Q9Y224 244 aaKnown RBP16.16■□□□□ 0.18
CCDC28B-201ENST00000373602 IGHV7-4-1A0A0J9YVY3 117 aa16.15■□□□□ 0.18
CCDC28B-201ENST00000373602 GNG7O60262 68 aa16.15■□□□□ 0.18
CCDC28B-201ENST00000373602 YIF1AO95070 293 aa16.15■□□□□ 0.18
CCDC28B-201ENST00000373602 CDS2O95674 445 aa16.15■□□□□ 0.18
CCDC28B-201ENST00000373602 OR5AC1P0C628 307 aa16.15■□□□□ 0.18
CCDC28B-201ENST00000373602 AKAIN1P0CW23 69 aa16.15■□□□□ 0.18
CCDC28B-201ENST00000373602 ETV6P41212 452 aa16.15■□□□□ 0.18
CCDC28B-201ENST00000373602 RPL5P46777 297 aaKnown RBP16.15■□□□□ 0.18
CCDC28B-201ENST00000373602 OR4C16Q8NGL9 310 aa16.15■□□□□ 0.18
CCDC28B-201ENST00000373602 NAA60Q9H7X0 242 aa16.15■□□□□ 0.18
CCDC28B-201ENST00000373602 UBQLN2Q9UHD9 624 aa16.15■□□□□ 0.18
CCDC28B-201ENST00000373602 OR4C46A6NHA9 309 aa16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 CHEK1O14757 476 aa16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 RNASE2P10153 161 aaKnown RBP16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 NPBWR1P48145 328 aa16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 SUB1P53999 127 aaKnown RBP eCLIP16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 ODF3L2Q3SX64 289 aa16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 Q6ZRM9 215 aa16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 TMEM116Q8NCL8 245 aa16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 DUSP18Q8NEJ0 188 aa16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 RNASE11Q8TAA1 199 aaKnown RBP16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 GLYATL2Q8WU03 294 aa16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 RNF2Q99496 336 aa16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 RHPN1-AS1Q9BWJ2 59 aa16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 GPR132Q9UNW8 380 aa16.14■□□□□ 0.17
CCDC28B-201ENST00000373602 TEX13DA0A0J9YY54 714 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-201ENST00000373602 GSTZ1O43708 216 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-201ENST00000373602 HOXA1P49639 335 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-201ENST00000373602 AARDQ4LEZ3 155 aa16.13■□□□□ 0.17
CCDC28B-201ENST00000373602 FAM219AQ8IW50 185 aa16.13■□□□□ 0.17
CCDC28B-201ENST00000373602 IL17DQ8TAD2 202 aa16.13■□□□□ 0.17
CCDC28B-201ENST00000373602 LHFPL5Q8TAF8 219 aa16.13■□□□□ 0.17
CCDC28B-201ENST00000373602 PRRT1Q99946 306 aa16.13■□□□□ 0.17
CCDC28B-201ENST00000373602 SLIRPQ9GZT3 109 aaKnown RBP16.13■□□□□ 0.17
CCDC28B-201ENST00000373602 C6orf62Q9GZU0 229 aaPredicted RBP16.13■□□□□ 0.17
CCDC28B-201ENST00000373602 TENM2Q9NT68 2774 aa16.12■□□□□ 0.17
CCDC28B-201ENST00000373602 TRAV14DV4A0A0A6YYC5 116 aa16.12■□□□□ 0.17
CCDC28B-201ENST00000373602 LCE6AA0A183 80 aa16.12■□□□□ 0.17
CCDC28B-201ENST00000373602 ANKRD20A5PA0PJZ0 165 aa16.12■□□□□ 0.17
CCDC28B-201ENST00000373602 H3BMQ9 156 aa16.12■□□□□ 0.17
CCDC28B-201ENST00000373602 CORTO00230 105 aa16.12■□□□□ 0.17
CCDC28B-201ENST00000373602 DHODHQ02127 395 aa16.12■□□□□ 0.17
CCDC28B-201ENST00000373602 SELENOHQ8IZQ5 122 aaKnown RBP16.12■□□□□ 0.17
CCDC28B-201ENST00000373602 RBPMSQ93062 196 aaKnown RBP16.12■□□□□ 0.17
CCDC28B-201ENST00000373602 OVOL2Q9BRP0 275 aa16.12■□□□□ 0.17
CCDC28B-201ENST00000373602 ENY2Q9NPA8 101 aa16.12■□□□□ 0.17
CCDC28B-201ENST00000373602 IGHV3-49A0A0A0MS15 119 aa16.11■□□□□ 0.17
CCDC28B-201ENST00000373602 NOL3O60936 208 aaKnown RBP16.11■□□□□ 0.17
CCDC28B-201ENST00000373602 SPCS3P61009 180 aa16.11■□□□□ 0.17
CCDC28B-201ENST00000373602 TOMM20LQ6UXN7 152 aa16.11■□□□□ 0.17
CCDC28B-201ENST00000373602 OR51S1Q8NGJ8 323 aa16.11■□□□□ 0.17
CCDC28B-201ENST00000373602 OR52E5Q8NH55 327 aa16.11■□□□□ 0.17
CCDC28B-201ENST00000373602 SOSTQ9BQB4 213 aa16.11■□□□□ 0.17
CCDC28B-201ENST00000373602 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.11■□□□□ 0.17
CCDC28B-201ENST00000373602 RSL24D1Q9UHA3 163 aaKnown RBP16.11■□□□□ 0.17
CCDC28B-201ENST00000373602 CRYM-AS1A6NIL9 109 aa16.1■□□□□ 0.17
CCDC28B-201ENST00000373602 TMEM50AO95807 157 aa16.1■□□□□ 0.17
CCDC28B-201ENST00000373602 BSXQ3C1V8 233 aa16.1■□□□□ 0.17
CCDC28B-201ENST00000373602 ZNF600Q6ZNG1 722 aa16.1■□□□□ 0.17
CCDC28B-201ENST00000373602 GINS3Q9BRX5 216 aa16.1■□□□□ 0.17
CCDC28B-201ENST00000373602 SACSQ9NZJ4 4579 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms