RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 IGHV3-23P01764 117 aa6.21□□□□□ -1.41
SYNE1-208ENST00000367256 ZNF688P0C7X2 276 aa6.21□□□□□ -1.41
SYNE1-208ENST00000367256 RNF182Q8N6D2 247 aa6.21□□□□□ -1.41
SYNE1-208ENST00000367256 TMEM186Q96B77 213 aa6.21□□□□□ -1.41
SYNE1-208ENST00000367256 IGHV3OR16-13A0A075B7E8 117 aa6.21□□□□□ -1.41
SYNE1-208ENST00000367256 IGHV3-74A0A0B4J1X5 117 aa6.21□□□□□ -1.41
SYNE1-208ENST00000367256 CRPP02741 224 aa6.21□□□□□ -1.41
SYNE1-208ENST00000367256 TRGV3P03979 118 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 ORMDL3Q8N138 153 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 CACNG8Q8WXS5 425 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 LAMTOR2Q9Y2Q5 125 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 A0A1B0GTI1 187 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 TFF2Q03403 129 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 SCARF2Q96GP6 870 aaPredicted RBP6.21□□□□□ -1.42
SYNE1-208ENST00000367256 RPRMQ9NS64 109 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 H3BUT2 72 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 TFF3Q07654 80 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 DUSP15Q9H1R2 295 aaPredicted RBP6.21□□□□□ -1.42
SYNE1-208ENST00000367256 WBP1LQ9NX94 342 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 LRRC37AA6NMS7 1700 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 CENPVL1A0A0U1RR11 272 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 UCP1P25874 307 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 NRN1LQ496H8 165 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 A0A0G2JMZ2 1700 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 LRRC37A2A6NM11 1700 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 IL6RP08887 468 aaPredicted RBP6.21□□□□□ -1.42
SYNE1-208ENST00000367256 TEX45Q8NA69 505 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 TRAV9-2A0A087WT02 112 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 IZUMO1RA6ND01 250 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 F8VVB4 439 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 F8VWA3 439 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 SRSF4Q08170 494 aaKnown RBP6.21□□□□□ -1.42
SYNE1-208ENST00000367256 KIR3DL3Q8N743 410 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 DLL3Q9NYJ7 618 aa6.21□□□□□ -1.42
SYNE1-208ENST00000367256 ALPK3Q96L96 1907 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 MUC21A0A0G2JKD1 596 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 MUC21A0A140T8X8 626 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 MUC21Q5SSG8 566 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 KLF14Q8TD94 323 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-208ENST00000367256 SCO2A0A1W2PP80 73 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 HIGD1CA8MV81 97 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 RIPPLY3P57055 190 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 PRSS53Q2L4Q9 553 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 ICAM4Q14773 271 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 ZNF585BQ52M93 769 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 NXT2Q9NPJ8 142 aaKnown RBP6.2□□□□□ -1.42
SYNE1-208ENST00000367256 CELA2AP08217 269 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 EIF4EBP2Q13542 120 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-208ENST00000367256 FAM71F2Q6NXP2 309 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 OR5P3Q8WZ94 311 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 TMEM131Q92545 1883 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 SPAARA0A1B0GVQ0 90 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 KLF4O43474 513 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 TGIF1Q15583 401 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 CENPVQ7Z7K6 275 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-208ENST00000367256 GTF3AQ92664 365 aaKnown RBP6.2□□□□□ -1.42
SYNE1-208ENST00000367256 LINC01587Q99440 93 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 GDF15Q99988 308 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 GP6Q9HCN6 339 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 SLC25A15Q9Y619 301 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 IGHV3OR16-10A0A075B7F0 116 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 PLNP26678 52 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 ZP1P60852 638 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 FOXA2Q9Y261 457 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-208ENST00000367256 IGHV3-49A0A0A0MS15 119 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 TRAV1-1A0A0B4J248 108 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 LINC00587B1AMM8 73 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 PIN1P1O15428 100 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 CGAP01215 116 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 PDLIM4P50479 330 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 LAIR2Q6ISS4 152 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 FAM19A2Q8N3H0 131 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 GGTLC3B5MD39 225 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 ZNF362Q5T0B9 420 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-208ENST00000367256 ARPC1AQ92747 370 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 FNDC4Q9H6D8 234 aaPredicted RBP6.2□□□□□ -1.42
SYNE1-208ENST00000367256 ZNF257Q9Y2Q1 563 aa6.2□□□□□ -1.42
SYNE1-208ENST00000367256 ZSWIM8A7E2V4 1837 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 TRGV2A0A075B6R0 118 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 IGHV1-69-2A0A0G2JMI3 117 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 ZNHIT1O43257 154 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 CDK2AP2O75956 126 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 PPBPP02775 128 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 NUP210Q8TEM1 1887 aaPredicted RBP6.19□□□□□ -1.42
SYNE1-208ENST00000367256 IFI27P40305 119 aaPredicted RBP6.19□□□□□ -1.42
SYNE1-208ENST00000367256 LHX8Q68G74 356 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 MEGF9Q9H1U4 602 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 MS4A6AQ9H2W1 248 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 Q9H3A6 140 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 SMAD7O15105 426 aaKnown RBP6.19□□□□□ -1.42
SYNE1-208ENST00000367256 FOXS1O43638 330 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 DNM1P46Q6ZS02 220 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 FER1L6-AS1Q8NA97 138 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 TMEM52Q8NDY8 209 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 A0A0J9YW62 118 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 ASPHD2Q6ICH7 369 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 FAM89BQ8N5H3 189 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 ZFAND6Q6FIF0 208 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 SRXN1Q9BYN0 137 aa6.19□□□□□ -1.42
SYNE1-208ENST00000367256 NHP2Q9NX24 153 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms