RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CHTOPQ9Y3Y2 248 aaKnown RBP5.41□□□□□ -1.54
UPF2-201ENST00000356352 TRIP11Q15643 1979 aa5.41□□□□□ -1.54
UPF2-201ENST00000356352 IGLV3-32A0A0A0MS00 114 aa5.41□□□□□ -1.54
UPF2-201ENST00000356352 SLC17A3O00476 420 aa5.41□□□□□ -1.54
UPF2-201ENST00000356352 LILRA1O75019 489 aa5.41□□□□□ -1.54
UPF2-201ENST00000356352 APOMO95445 188 aa5.41□□□□□ -1.54
UPF2-201ENST00000356352 ATP5G3P48201 142 aa5.41□□□□□ -1.54
UPF2-201ENST00000356352 LHX2P50458 406 aa5.41□□□□□ -1.54
UPF2-201ENST00000356352 MRPL14Q6P1L8 145 aaKnown RBP5.41□□□□□ -1.54
UPF2-201ENST00000356352 SIGLEC15Q6ZMC9 328 aa5.41□□□□□ -1.54
UPF2-201ENST00000356352 ZNF638Q14966 1978 aaKnown RBP5.41□□□□□ -1.54
UPF2-201ENST00000356352 LOC102723996A0A087X1L8 192 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 IL18BPO95998 194 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 IGFBP3P17936 291 aaPredicted RBP5.4□□□□□ -1.54
UPF2-201ENST00000356352 RHOGP84095 191 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 PAX8Q06710 450 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 MYO9BQ13459 2157 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 C9orf106Q8NAJ2 232 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 OR9G4Q8NGQ1 327 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 RNF5Q99942 180 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 IGLV3-12A0A075B6K2 115 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 GGTLC3B5MD39 225 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 IGHV3-11P01762 117 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 CCL1P22362 96 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 TMEM95Q3KNT9 176 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 MORN2Q502X0 79 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 C20orf204Q6ZNR8 217 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 SEPSECSQ9HD40 501 aaKnown RBP5.4□□□□□ -1.54
UPF2-201ENST00000356352 S4R3C0 116 aa5.4□□□□□ -1.54
UPF2-201ENST00000356352 TRPM6Q9BX84 2022 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 TMEM170AQ8WVE7 144 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 DPH3P1Q9H4G8 78 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 PSG8Q9UQ74 426 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 TRAV8-4A0A0B4J246 113 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 ERVH48-1M5A8F1 160 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 HOXA3O43365 443 aaPredicted RBP5.4□□□□□ -1.55
UPF2-201ENST00000356352 CA1P00915 261 aaPredicted RBP5.4□□□□□ -1.55
UPF2-201ENST00000356352 CTSBP07858 339 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 EGR1P18146 543 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 ATXN8Q156A1 80 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 S100A7L2Q5SY68 101 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 C1QL2Q7Z5L3 287 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 IGKCP01834 107 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 CDKN1AP38936 164 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 MINOS1Q5TGZ0 78 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 PLPPR1Q8TBJ4 325 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 GNB1LQ9BYB4 327 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 MINOS1-NBL1R4GNA1 71 aa5.4□□□□□ -1.55
UPF2-201ENST00000356352 ADAMTS7Q9UKP4 1686 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.39□□□□□ -1.55
UPF2-201ENST00000356352 TRAV8-2A0A0B4J237 113 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 TRAV41A0A0B4J266 112 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 TMEM238C9JI98 176 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 MPZP25189 248 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 TDGF1P3P51864 188 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 ZP1P60852 638 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 SPSB3Q6PJ21 355 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 SPRED2Q7Z698 418 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 PROB1E7EW31 1015 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 NAPSAO96009 420 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 ERVK11-1P61568 191 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 SEC11AP67812 179 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 COQ2Q96H96 371 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 DMRTA2Q96SC8 542 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 RBBP6Q7Z6E9 1792 aaKnown RBP5.39□□□□□ -1.55
UPF2-201ENST00000356352 SIGLEC5O15389 551 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 CKS1BP61024 79 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 RPL23P62829 140 aaKnown RBP5.39□□□□□ -1.55
UPF2-201ENST00000356352 FAM201AQ5SY85 155 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 CHCHD5Q9BSY4 110 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 SDK1Q7Z5N4 2213 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 TDRD15B5MCY1 1934 aaKnown RBP5.39□□□□□ -1.55
UPF2-201ENST00000356352 RAMP1O60894 148 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 ZNF585BQ52M93 769 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 MUC21Q5SSG8 566 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 WBP1Q96G27 269 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 C14orf144Q96I85 54 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 CLDN16Q9Y5I7 305 aa5.39□□□□□ -1.55
UPF2-201ENST00000356352 ZNFX1Q9P2E3 1918 aaKnown RBP5.38□□□□□ -1.55
UPF2-201ENST00000356352 F8WEM9 126 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 IGHV4-39P01824 125 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 UMODP07911 640 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 LINC00614P0C842 121 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 CSRP3P50461 194 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 RASL11AQ6T310 242 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 TSKUQ8WUA8 353 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 SLC25A28Q96A46 364 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 PLEKHB2Q96CS7 222 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 A0A0G2JMM0 328 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 A0A1W2PPB8 328 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 A0A1W2PRS3 328 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 KIR3DP1A8MWS1 328 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 ZNF415Q09FC8 603 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 SRSF6Q13247 344 aaKnown RBP5.38□□□□□ -1.55
UPF2-201ENST00000356352 C1QTNF4Q9BXJ3 329 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 MS4A6AQ9H2W1 248 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 UBR3Q6ZT12 1888 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 TRAV9-2A0A087WT02 112 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 A0A1B0GTI1 187 aa5.38□□□□□ -1.55
UPF2-201ENST00000356352 M0R2P5 195 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms