RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 GTF3AQ92664 365 aaKnown RBP14.54□□□□□ -0.08
SYNPO-201ENST00000307662 TIMP4Q99727 224 aa14.54□□□□□ -0.08
SYNPO-201ENST00000307662 IGHV3OR16-12A0A075B7B8 117 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 ZNF837Q96EG3 531 aaPredicted RBP14.53□□□□□ -0.08
SYNPO-201ENST00000307662 DCTN5Q9BTE1 182 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 EPDR1Q9UM22 224 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 C15orf61A6NNL5 157 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 OR13C6PQ8NH95 151 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 DEPPQ9NTK1 212 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 H7C1H1 209 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 TIMP3P35625 211 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 HSD52Q0P140 79 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 IGHV1-69-2A0A0G2JMI3 117 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 CEACAM4O75871 244 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 SUPT4H1P63272 117 aaKnown RBP14.53□□□□□ -0.08
SYNPO-201ENST00000307662 TEX29Q8N6K0 151 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 MS4A6AQ9H2W1 248 aa14.53□□□□□ -0.08
SYNPO-201ENST00000307662 LOC105371242A0A075B767 164 aa14.52□□□□□ -0.08
SYNPO-201ENST00000307662 NKX2-8O15522 239 aa14.52□□□□□ -0.08
SYNPO-201ENST00000307662 ANAPC13Q9BS18 74 aa14.52□□□□□ -0.08
SYNPO-201ENST00000307662 FBXL15Q9H469 300 aa14.52□□□□□ -0.08
SYNPO-201ENST00000307662 WDR83OSQ9Y284 106 aa14.52□□□□□ -0.08
SYNPO-201ENST00000307662 RAMP3O60896 148 aa14.52□□□□□ -0.08
SYNPO-201ENST00000307662 EFNB3Q15768 340 aa14.52□□□□□ -0.08
SYNPO-201ENST00000307662 UPK2O00526 184 aa14.52□□□□□ -0.09
SYNPO-201ENST00000307662 DPM2O94777 84 aa14.52□□□□□ -0.09
SYNPO-201ENST00000307662 ACTL10Q5JWF8 245 aa14.52□□□□□ -0.09
SYNPO-201ENST00000307662 LURAP1LQ8IV03 231 aa14.52□□□□□ -0.09
SYNPO-201ENST00000307662 MRPL20Q9BYC9 149 aaKnown RBP14.52□□□□□ -0.09
SYNPO-201ENST00000307662 IGHV3OR16-13A0A075B7E8 117 aa14.52□□□□□ -0.09
SYNPO-201ENST00000307662 IGHV3-74A0A0B4J1X5 117 aa14.52□□□□□ -0.09
SYNPO-201ENST00000307662 NDUFS8O00217 210 aa14.52□□□□□ -0.09
SYNPO-201ENST00000307662 GLRXP35754 106 aa14.52□□□□□ -0.09
SYNPO-201ENST00000307662 ATP5L2Q7Z4Y8 100 aa14.52□□□□□ -0.09
SYNPO-201ENST00000307662 FAM90A1Q86YD7 464 aa14.52□□□□□ -0.09
SYNPO-201ENST00000307662 C9JCJ5 164 aa14.51□□□□□ -0.09
SYNPO-201ENST00000307662 SNRPD3P62318 126 aaKnown RBP14.51□□□□□ -0.09
SYNPO-201ENST00000307662 ZNF497Q6ZNH5 498 aa14.51□□□□□ -0.09
SYNPO-201ENST00000307662 TSKUQ8WUA8 353 aa14.51□□□□□ -0.09
SYNPO-201ENST00000307662 ZNF585BQ52M93 769 aa14.51□□□□□ -0.09
SYNPO-201ENST00000307662 COLQQ9Y215 455 aaPredicted RBP14.51□□□□□ -0.09
SYNPO-201ENST00000307662 COQ2Q96H96 371 aa14.51□□□□□ -0.09
SYNPO-201ENST00000307662 IGHV3-23P01764 117 aa14.51□□□□□ -0.09
SYNPO-201ENST00000307662 CACNG7P62955 275 aa14.51□□□□□ -0.09
SYNPO-201ENST00000307662 MRPL52Q86TS9 123 aaKnown RBP14.51□□□□□ -0.09
SYNPO-201ENST00000307662 WBP1Q96G27 269 aa14.51□□□□□ -0.09
SYNPO-201ENST00000307662 DNAJC13O75165 2243 aa14.51□□□□□ -0.09
SYNPO-201ENST00000307662 TMEM262E9PQX1 116 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 HOXA3O43365 443 aaPredicted RBP14.5□□□□□ -0.09
SYNPO-201ENST00000307662 SAA1P0DJI8 122 aaPredicted RBP14.5□□□□□ -0.09
SYNPO-201ENST00000307662 PPP1R32Q7Z5V6 425 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 FAM181BA6NEQ2 426 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 CECR9P0C854 216 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 C21orf62Q9NYP8 219 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 S4R3C0 116 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 IQCF6A8MYZ5 107 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 YPEL1O60688 119 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 PSG7Q13046 419 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 SAMD5Q5TGI4 173 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 YPEL2Q96QA6 119 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 ZNF319Q9P2F9 582 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 TNFRSF18Q9Y5U5 241 aa14.5□□□□□ -0.09
SYNPO-201ENST00000307662 FAM216BQ8N7L0 139 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 RALGAPA2Q2PPJ7 1873 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 FAM90A9PA6NNJ1 464 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 PYYP10082 97 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 TMEM95Q3KNT9 176 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 ZNF479Q96JC4 524 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 SAA2-SAA4A0A096LPE2 208 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 IGHV3-66A0A0C4DH42 116 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 PSMB11A5LHX3 300 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 H3BRM9 83 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 SAA2P0DJI9 122 aaPredicted RBP14.49□□□□□ -0.09
SYNPO-201ENST00000307662 NXT2Q9NPJ8 142 aaKnown RBP14.49□□□□□ -0.09
SYNPO-201ENST00000307662 MYOFQ9NZM1 2061 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 GZMBP10144 247 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 SRSF4Q08170 494 aaKnown RBP14.49□□□□□ -0.09
SYNPO-201ENST00000307662 STPG1Q5TH74 334 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 SLC25A2Q9BXI2 301 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 FBXL7Q9UJT9 491 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 RNF115Q9Y4L5 304 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 SCN8AQ9UQD0 1980 aa14.49□□□□□ -0.09
SYNPO-201ENST00000307662 VWCEQ96DN2 955 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 IGKV3OR2-268A0A0C4DH90 116 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 FTH1P19P0C7X4 201 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 LINC01551Q86U37 167 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 DUX5Q96PT3 197 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 LOC285556D6RIA3 1793 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 TCRBV4S1A1TA0A5B7 111 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 IGLV3-19P01714 112 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 CELA3AP09093 270 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 ADCYAP1P18509 176 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 SRSF7Q16629 238 aaKnown RBP eCLIP14.48□□□□□ -0.09
SYNPO-201ENST00000307662 CRIPAKQ8N1N5 446 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 AGMATQ9BSE5 352 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 FABP5P3A8MUU1 101 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 IGKCP01834 107 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 MST1P26927 711 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 FAM201AQ5SY85 155 aa14.48□□□□□ -0.09
SYNPO-201ENST00000307662 CLEC2AQ6UVW9 174 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms