RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 C1QTNF5Q9BXJ0 243 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 HIGD1AQ9Y241 93 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 ADAMTS9Q9P2N4 1935 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 TRAV24A0A0B4J272 114 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 ETV2O00321 342 aaPredicted RBP12.84□□□□□ -0.35
SHH-201ENST00000297261 SMIM17P0DL12 118 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 CFPP27918 469 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 GFRA1P56159 465 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 B3GALT5-AS1P59052 145 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 CCL8P80075 99 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 Q6ZRM9 215 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 MEGF9Q9H1U4 602 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 ABCA4P78363 2273 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 TRAV9-1A0A075B6T8 112 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 A1L4Q6 167 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 WIPF3A6NGB9 483 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 AHRRA9YTQ3 701 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 H3BUT2 72 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 HOXA4Q00056 320 aaPredicted RBP12.84□□□□□ -0.35
SHH-201ENST00000297261 FOXL1Q12952 345 aa12.84□□□□□ -0.35
SHH-201ENST00000297261 F5H697 171 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 TWIST1Q15672 202 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 DNLZQ5SXM8 178 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 MYOZ3Q8TDC0 251 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 WDR83OSQ9Y284 106 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 IGKV1-5P01602 117 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 COX5BP10606 129 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 OR13A1Q8NGR1 328 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 FNDC4Q9H6D8 234 aaPredicted RBP12.83□□□□□ -0.36
SHH-201ENST00000297261 ELOVL5Q9NYP7 299 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 INSIG2Q9Y5U4 225 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 CHD3Q12873 2000 aaKnown RBP12.83□□□□□ -0.36
SHH-201ENST00000297261 GOLT1AQ6ZVE7 132 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 C1orf174Q8IYL3 243 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 C1orf147Q96MC9 270 aaPredicted RBP12.83□□□□□ -0.36
SHH-201ENST00000297261 SFXN3Q9BWM7 321 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 TMEM131Q92545 1883 aa12.83□□□□□ -0.36
SHH-201ENST00000297261 SLC25A17O43808 307 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 RPL13AP40429 203 aaKnown RBP12.82□□□□□ -0.36
SHH-201ENST00000297261 LYRM7Q5U5X0 104 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 NABP1Q96AH0 204 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 C18orf15Q96N68 181 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 DLL1O00548 723 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 MOSP00540 346 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 AMMECR1LQ6DCA0 310 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 LIME1Q9H400 295 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 THYN1Q9P016 225 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 KIR2DL2P43627 348 aaPredicted RBP12.82□□□□□ -0.36
SHH-201ENST00000297261 FOXG1P55316 489 aaPredicted RBP12.82□□□□□ -0.36
SHH-201ENST00000297261 TIMD4Q96H15 378 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 PNRC2Q9NPJ4 139 aaKnown RBP12.82□□□□□ -0.36
SHH-201ENST00000297261 ONECUT1Q9UBC0 465 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 TMEM189A5PLL7 270 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 ITLN1Q8WWA0 313 aa12.82□□□□□ -0.36
SHH-201ENST00000297261 MUC21A0A0G2JKD1 596 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 MUC21A0A140T8X8 626 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 E9PLN8 166 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 TFF1P04155 84 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 RPL27AP46776 148 aaKnown RBP12.81□□□□□ -0.36
SHH-201ENST00000297261 MUC21Q5SSG8 566 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 TCF24Q7RTU0 167 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 DMRTC2Q8IXT2 367 aaPredicted RBP12.81□□□□□ -0.36
SHH-201ENST00000297261 NAA38Q9BRA0 125 aaKnown RBP12.81□□□□□ -0.36
SHH-201ENST00000297261 IZUMO1RA6ND01 250 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 C3orf79P0CE67 100 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 UNQ6494/PRO21346Q6UXR6 183 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 SPCS1Q9Y6A9 102 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 C7orf71A4D174 169 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 GFRA3O60609 400 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 APOHP02749 345 aaPredicted RBP12.81□□□□□ -0.36
SHH-201ENST00000297261 ZNF502Q8TBZ5 544 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 SPRR3Q9UBC9 169 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 JPT1Q9UK76 154 aa12.81□□□□□ -0.36
SHH-201ENST00000297261 CRYGSP22914 178 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 TMEM136Q6ZRR5 245 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 WFDC3Q8IUB2 231 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 CRIM1Q9NZV1 1036 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 C1orf185Q5T7R7 199 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 GRAMD2BQ96HH9 432 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 HIST1H4GQ99525 98 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 GNB1LQ9BYB4 327 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 PEX7O00628 323 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 PRRX1P54821 245 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 EFNB3Q15768 340 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 C19orf24Q9BVV8 132 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 NBEAP1P0C6P0 100 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 GPR183P32249 361 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 LINC00305Q7Z4B0 112 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 RNASEH2CQ8TDP1 164 aaKnown RBP12.8□□□□□ -0.36
SHH-201ENST00000297261 USF3Q68DE3 2245 aa12.8□□□□□ -0.36
SHH-201ENST00000297261 SELLP14151 372 aa12.79□□□□□ -0.36
SHH-201ENST00000297261 MBNL2Q5VZF2 373 aaKnown RBP12.79□□□□□ -0.36
SHH-201ENST00000297261 TMEM108Q6UXF1 575 aa12.79□□□□□ -0.36
SHH-201ENST00000297261 SCNM1Q9BWG6 230 aa12.79□□□□□ -0.36
SHH-201ENST00000297261 RPL30P62888 115 aaKnown RBP12.79□□□□□ -0.36
SHH-201ENST00000297261 MPV17L2Q567V2 206 aa12.79□□□□□ -0.36
SHH-201ENST00000297261 OSTCQ9NRP0 149 aa12.79□□□□□ -0.36
SHH-201ENST00000297261 TRAV8-6A0A0B4J262 113 aa12.79□□□□□ -0.36
SHH-201ENST00000297261 CDKN1AP38936 164 aa12.79□□□□□ -0.36
SHH-201ENST00000297261 ZNF146Q15072 292 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms