RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 S100A12P80511 92 aa13.52□□□□□ -0.24
VPS54-201ENST00000272322 FLYWCH2Q96CP2 140 aaKnown RBP13.52□□□□□ -0.24
VPS54-201ENST00000272322 PRDM13Q9H4Q3 707 aa13.52□□□□□ -0.24
VPS54-201ENST00000272322 UPK2O00526 184 aa13.52□□□□□ -0.25
VPS54-201ENST00000272322 NDUFB3O43676 98 aa13.52□□□□□ -0.25
VPS54-201ENST00000272322 RUSC1-AS1Q66K80 236 aa13.52□□□□□ -0.25
VPS54-201ENST00000272322 LEMD1Q68G75 181 aa13.52□□□□□ -0.25
VPS54-201ENST00000272322 MISP3Q96FF7 219 aa13.52□□□□□ -0.25
VPS54-201ENST00000272322 CTSZQ9UBR2 303 aa13.52□□□□□ -0.25
VPS54-201ENST00000272322 SCGB1D1O95968 90 aa13.52□□□□□ -0.25
VPS54-201ENST00000272322 APOA2P02652 100 aa13.52□□□□□ -0.25
VPS54-201ENST00000272322 IGFL3Q6UXB1 125 aa13.52□□□□□ -0.25
VPS54-201ENST00000272322 SLC25A48Q6ZT89 311 aaKnown RBP13.52□□□□□ -0.25
VPS54-201ENST00000272322 OR8I2Q8N0Y5 310 aa13.52□□□□□ -0.25
VPS54-201ENST00000272322 SCNM1Q9BWG6 230 aa13.52□□□□□ -0.25
VPS54-201ENST00000272322 KCNIP2Q9NS61 270 aa13.51□□□□□ -0.25
VPS54-201ENST00000272322 MRPL36Q9P0J6 103 aaKnown RBP13.51□□□□□ -0.25
VPS54-201ENST00000272322 LSM4Q9Y4Z0 139 aaKnown RBP13.51□□□□□ -0.25
VPS54-201ENST00000272322 S4R3C0 116 aa13.51□□□□□ -0.25
VPS54-201ENST00000272322 SSTP61278 116 aa13.51□□□□□ -0.25
VPS54-201ENST00000272322 CTAG1AP78358 180 aa13.51□□□□□ -0.25
VPS54-201ENST00000272322 MRPL54Q6P161 138 aaKnown RBP13.51□□□□□ -0.25
VPS54-201ENST00000272322 Q8NA96 180 aa13.51□□□□□ -0.25
VPS54-201ENST00000272322 TMEM106BQ9NUM4 274 aa13.51□□□□□ -0.25
VPS54-201ENST00000272322 RPL8P62917 257 aaKnown RBP13.51□□□□□ -0.25
VPS54-201ENST00000272322 TMEM183AQ8IXX5 376 aa13.51□□□□□ -0.25
VPS54-201ENST00000272322 ANAPC16Q96DE5 110 aa13.51□□□□□ -0.25
VPS54-201ENST00000272322 F2Z2F3 143 aa13.5□□□□□ -0.25
VPS54-201ENST00000272322 FAM103A1Q9BTL3 118 aaKnown RBP13.5□□□□□ -0.25
VPS54-201ENST00000272322 PRNDQ9UKY0 176 aa13.5□□□□□ -0.25
VPS54-201ENST00000272322 FOXA2Q9Y261 457 aaPredicted RBP13.5□□□□□ -0.25
VPS54-201ENST00000272322 LINC00869P0C866 280 aa13.5□□□□□ -0.25
VPS54-201ENST00000272322 USF2Q15853 346 aaPredicted RBP13.5□□□□□ -0.25
VPS54-201ENST00000272322 CENPWQ5EE01 88 aa13.5□□□□□ -0.25
VPS54-201ENST00000272322 HELTA6NFD8 242 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 MPDU1O75352 247 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 WT1-ASQ06250 92 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 TEX38Q6PEX7 206 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 OR52E5Q8NH55 327 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 ASCL2Q99929 193 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 HIST1H1BP16401 226 aaKnown RBP13.49□□□□□ -0.25
VPS54-201ENST00000272322 ADMP35318 185 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 KIR2DS2P43631 304 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 GATA4P43694 442 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 CNN1P51911 297 aaKnown RBP13.49□□□□□ -0.25
VPS54-201ENST00000272322 RANP62826 216 aaKnown RBP13.49□□□□□ -0.25
VPS54-201ENST00000272322 ASCL5Q7RTU5 278 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 GAL3ST2Q9H3Q3 398 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 ZNF430Q9H8G1 570 aaPredicted RBP13.49□□□□□ -0.25
VPS54-201ENST00000272322 GNG4P50150 75 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 PRCDQ00LT1 54 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 KRTCAP3Q53RY4 240 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 LRRC10Q5BKY1 277 aa13.49□□□□□ -0.25
VPS54-201ENST00000272322 FNDC4Q9H6D8 234 aaPredicted RBP13.49□□□□□ -0.25
VPS54-201ENST00000272322 ELOA3CA0A087WX78 387 aaPredicted RBP13.48□□□□□ -0.25
VPS54-201ENST00000272322 E7EQL1 145 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 GZMBP10144 247 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 CR1LQ2VPA4 569 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 TGIF2LXQ8IUE1 241 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 RNASE6Q93091 150 aaKnown RBP13.48□□□□□ -0.25
VPS54-201ENST00000272322 DMRT1Q9Y5R6 373 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 A0A087X0M5 115 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 A0A1B0GX30 115 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 H0YJW9 148 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 TMEM178BH3BS89 294 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 FCN1O00602 326 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 UBE2L3P68036 154 aaKnown RBP13.48□□□□□ -0.25
VPS54-201ENST00000272322 ERHP84090 104 aaKnown RBP13.48□□□□□ -0.25
VPS54-201ENST00000272322 SPACA3Q8IXA5 215 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 FAM169BQ8N8A8 192 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 OR5AU1Q8NGC0 362 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 FAM222BQ8WU58 562 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 LINC00312Q9Y6C7 94 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 ZNF705FA8MVS1 300 aaPredicted RBP13.48□□□□□ -0.25
VPS54-201ENST00000272322 ZNF705DP0CH99 300 aaPredicted RBP13.48□□□□□ -0.25
VPS54-201ENST00000272322 ZNF705BP0CI00 300 aaPredicted RBP13.48□□□□□ -0.25
VPS54-201ENST00000272322 RNASE2P10153 161 aaKnown RBP13.48□□□□□ -0.25
VPS54-201ENST00000272322 GNG5P63218 68 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 TNXAQ16473 311 aa13.48□□□□□ -0.25
VPS54-201ENST00000272322 GGTLC3B5MD39 225 aa13.47□□□□□ -0.25
VPS54-201ENST00000272322 ZNF503Q96F45 646 aa13.47□□□□□ -0.25
VPS54-201ENST00000272322 SLC45A2Q9UMX9 530 aa13.47□□□□□ -0.25
VPS54-201ENST00000272322 ZFYVE26Q68DK2 2539 aa13.47□□□□□ -0.25
VPS54-201ENST00000272322 SNURFLB1AK76 121 aa13.47□□□□□ -0.25
VPS54-201ENST00000272322 C1orf174Q8IYL3 243 aa13.47□□□□□ -0.25
VPS54-201ENST00000272322 OR1B1Q8NGR6 318 aa13.47□□□□□ -0.25
VPS54-201ENST00000272322 ADTRPQ96IZ2 230 aa13.47□□□□□ -0.25
VPS54-201ENST00000272322 SLC35E1Q96K37 410 aa13.47□□□□□ -0.25
VPS54-201ENST00000272322 HRNRQ86YZ3 2850 aaPredicted RBP13.46□□□□□ -0.25
VPS54-201ENST00000272322 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.46□□□□□ -0.25
VPS54-201ENST00000272322 VENTXO95231 258 aa13.46□□□□□ -0.25
VPS54-201ENST00000272322 MT-CO2P00403 227 aa13.46□□□□□ -0.25
VPS54-201ENST00000272322 AREGP15514 252 aa13.46□□□□□ -0.25
VPS54-201ENST00000272322 DIRC2Q96SL1 478 aa13.46□□□□□ -0.25
VPS54-201ENST00000272322 ELOVL5Q9NYP7 299 aa13.46□□□□□ -0.25
VPS54-201ENST00000272322 A0A1B0GWJ7 208 aa13.46□□□□□ -0.26
VPS54-201ENST00000272322 GGCTO75223 188 aaKnown RBP13.46□□□□□ -0.26
VPS54-201ENST00000272322 RPL29P47914 159 aaKnown RBP13.46□□□□□ -0.26
VPS54-201ENST00000272322 TMEM144Q7Z5S9 345 aa13.46□□□□□ -0.26
VPS54-201ENST00000272322 OR1L8Q8NGR8 309 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms