RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 OR5G3P0C626 314 aa8.24□□□□□ -1.09
LIG3-201ENST00000262327 PQLC2Q6ZP29 291 aa8.24□□□□□ -1.09
LIG3-201ENST00000262327 RBMXL3Q8N7X1 1067 aaKnown RBP8.24□□□□□ -1.09
LIG3-201ENST00000262327 ITLN1Q8WWA0 313 aa8.24□□□□□ -1.09
LIG3-201ENST00000262327 RAB1CQ92928 201 aa8.24□□□□□ -1.09
LIG3-201ENST00000262327 SARAFQ96BY9 339 aa8.24□□□□□ -1.09
LIG3-201ENST00000262327 C20orf144Q9BQM9 153 aa8.24□□□□□ -1.09
LIG3-201ENST00000262327 OR7C2O60412 319 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 TNFSF13O75888 250 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 IGKV1-16P04430 117 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 RPL19P84098 196 aaKnown RBP8.23□□□□□ -1.09
LIG3-201ENST00000262327 ENY2Q9NPA8 101 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 TACC2O95359 2948 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 SRRM5B3KS81 715 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 MMD2Q8IY49 270 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 TCTEX1D1Q8N7M0 179 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 ST6GALNAC3Q8NDV1 305 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 OR4C5Q8NGB2 326 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 WFDC12Q8WWY7 111 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 SAMD10Q9BYL1 202 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 JPT1Q9UK76 154 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 LSM4Q9Y4Z0 139 aaKnown RBP8.23□□□□□ -1.09
LIG3-201ENST00000262327 IGKV1OR2-108A0A075B7D4 117 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 LOC102724200A0A096LPH7 203 aaPredicted RBP8.23□□□□□ -1.09
LIG3-201ENST00000262327 MGST3O14880 152 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 MGST1P10620 155 aaKnown RBP8.23□□□□□ -1.09
LIG3-201ENST00000262327 RHOBP62745 196 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 CENPWQ5EE01 88 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 MRPL54Q6P161 138 aaKnown RBP8.23□□□□□ -1.09
LIG3-201ENST00000262327 OR10W1Q8NGF6 305 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 EAF1Q96JC9 268 aaPredicted RBP8.23□□□□□ -1.09
LIG3-201ENST00000262327 SERTAD4Q9NUC0 356 aa8.23□□□□□ -1.09
LIG3-201ENST00000262327 CSMD1Q96PZ7 3565 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 C15orf61A6NNL5 157 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 SRRM4A7MD48 611 aaKnown RBP8.22□□□□□ -1.09
LIG3-201ENST00000262327 YPEL1O60688 119 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 MPDU1O75352 247 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 CD99P14209 185 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 C17orf58Q2M2W7 97 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 OR4S2Q8NH73 311 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 ZCCHC14Q8WYQ9 949 aaKnown RBP8.22□□□□□ -1.09
LIG3-201ENST00000262327 LINC00479Q96M42 142 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 YPEL2Q96QA6 119 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 CCL13Q99616 98 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 TMEM106BQ9NUM4 274 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 IDI2-AS1Q9NZ38 188 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 IL36BQ9NZH7 164 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 TRAV5A0A0B4J249 113 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 REG1BP48304 166 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 KRTDAPP60985 99 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 SUMO1P63165 101 aaKnown RBP8.22□□□□□ -1.09
LIG3-201ENST00000262327 LDLRAD2Q5SZI1 272 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 TMEM108Q6UXF1 575 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 ZCCHC24Q8N2G6 241 aaKnown RBP8.22□□□□□ -1.09
LIG3-201ENST00000262327 FAM216BQ8N7L0 139 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 OR9G1Q8NH87 305 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 ABHD17AQ96GS6 310 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 UHRF2Q96PU4 802 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 NABP2Q9BQ15 211 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 ZNF430Q9H8G1 570 aaPredicted RBP8.22□□□□□ -1.09
LIG3-201ENST00000262327 OR51B2Q9Y5P1 312 aa8.22□□□□□ -1.09
LIG3-201ENST00000262327 NDUFS8O00217 210 aa8.21□□□□□ -1.09
LIG3-201ENST00000262327 HSPE1P61604 102 aaKnown RBP8.21□□□□□ -1.09
LIG3-201ENST00000262327 MORN5Q5VZ52 161 aa8.21□□□□□ -1.09
LIG3-201ENST00000262327 BHLHA15Q7RTS1 189 aaPredicted RBP8.21□□□□□ -1.09
LIG3-201ENST00000262327 STARD4Q96DR4 205 aa8.21□□□□□ -1.09
LIG3-201ENST00000262327 SSBP3Q9BWW4 388 aaPredicted RBP8.21□□□□□ -1.09
LIG3-201ENST00000262327 IL19Q9UHD0 177 aa8.21□□□□□ -1.09
LIG3-201ENST00000262327 NAT8BQ9UHF3 227 aa8.21□□□□□ -1.09
LIG3-201ENST00000262327 RAXQ9Y2V3 346 aa8.21□□□□□ -1.09
LIG3-201ENST00000262327 HELTA6NFD8 242 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 J3QR06 171 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 K7EM74 188 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 LINC00869P0C866 280 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 PMCHP20382 165 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 GNG4P50150 75 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 GUSBP1Q15486 140 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 C22orf34Q6ZV56 151 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 DDB2Q92466 427 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 SGK494Q96LW2 274 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 ZNF71Q9NQZ8 489 aaPredicted RBP8.21□□□□□ -1.1
LIG3-201ENST00000262327 TUBG2Q9NRH3 451 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 PROCRQ9UNN8 238 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 A6NJY4 79 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 TOMM40O96008 361 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 LGALS4P56470 323 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 TPPP2P59282 170 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 YPEL3P61236 119 aaPredicted RBP8.21□□□□□ -1.1
LIG3-201ENST00000262327 RPEL1Q2QD12 228 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 ZNF503Q96F45 646 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 RCHY1Q96PM5 261 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 GNB4Q9HAV0 340 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 V9GYV3 84 aa8.21□□□□□ -1.1
LIG3-201ENST00000262327 TANC2Q9HCD6 1990 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 PRB4P10163 310 aaPredicted RBP8.2□□□□□ -1.1
LIG3-201ENST00000262327 SSBP2P81877 361 aaPredicted RBP8.2□□□□□ -1.1
LIG3-201ENST00000262327 RAB31Q13636 194 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 FBLN7Q53RD9 439 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 OCIAD2Q56VL3 154 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 MBNL2Q5VZF2 373 aaKnown RBP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms