RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CTSBP07858 339 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 CKS2P33552 79 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 P2RY1P47900 373 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 UBE2BP63146 152 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 PAX2Q02962 417 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 C1orf140Q5VVS0 124 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 LDLRAD3Q86YD5 345 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 SAXO1Q8IYX7 474 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 PNKDQ8N490 385 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 ANKRD29Q8N6D5 301 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 MARVELD1Q9BSK0 173 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 CHAC1Q9BUX1 264 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 KLF12Q9Y4X4 402 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 R4GMQ9 66 aa2.4□□□□□ -2.03
SCN1A-219ENST00000641575 MARCH11A6NNE9 402 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 K7ESM1 405 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 IFITM3Q01628 133 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE13Q4V321 117 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM92Q6UXU6 159 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 C7orf33Q8WU49 177 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ABHD17AQ96GS6 310 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SIGLEC11Q96RL6 698 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 NDUFAF3Q9BU61 184 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 DSPP15924 2871 aaKnown RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 LOC105371267A0A1B0GV96 52 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 H0YGG7 62 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 PFN1P07737 140 aaKnown RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 GPR183P32249 361 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 FOXF2Q12947 444 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF345Q14585 488 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 C1orf53Q5VUE5 145 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 HSD11B1LQ7Z5J1 315 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM174Q8WUU8 243 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ST6GALNAC6Q969X2 333 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 PCSK5Q92824 1860 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ARNTLO00327 626 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 RRHO14718 337 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ATXN8Q156A1 80 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF114Q8NC26 417 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 OR10D3Q8NH80 312 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ORAOV1Q8WV07 137 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 GPR146Q96CH1 333 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 PGLYRP4Q96LB8 373 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 LINC00470Q9BZP3 86 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ZMIZ1Q9ULJ6 1067 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 NEUROG3Q9Y4Z2 214 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 A0A0A6YYD4 124 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TRAV41A0A0B4J266 112 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 A8MWV9 139 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 CLPSP04118 112 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 WNT1P04628 370 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 NXPH1P58417 271 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 FMODQ06828 376 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM255AQ5JRV8 349 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SPATA31B1PQ5VZV4 182 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SYS1Q8N2H4 156 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 OR11H1Q8NG94 326 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 OR11H2Q8NH07 326 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 PFN4Q8NHR9 129 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 IGFBPL1Q8WX77 278 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SNED1Q8TER0 1413 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 KMT2BQ9UMN6 2715 aaPredicted RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 KIR2DL5BA0A0G2JN68 375 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 KIR2DL5BA0A0G2JPC4 375 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 J3KTA2 159 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 METRNLQ641Q3 311 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TCTN3Q6NUS6 607 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM179BQ7Z7N9 219 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ISCA2Q86U28 154 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 FAM72BQ86X60 149 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 KIR2DL5AQ8N109 375 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 AURKAIP1Q9NWT8 199 aaPredicted RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TRAV3A0A0B4J244 114 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 MPTX1A8MV57 137 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM14DPA8MWL7 114 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 B4GALT3O60512 393 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SBK3P0C264 359 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 MESP2Q0VG99 397 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SRSF6Q13247 344 aaKnown RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 OR10J3Q5JRS4 329 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 VN1R1Q9GZP7 353 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SLC25A15Q9Y619 301 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF831Q5JPB2 1677 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TRBV5-7A0A0A0MS05 114 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 DPRXA6NFQ7 191 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF729A6NN14 1252 aaPredicted RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 FFAR1O14842 300 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 LDLRAD4O15165 306 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TBX18O95935 607 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 HTN3P15516 51 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 MUC1P15941 1255 aaPredicted RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 UBE2D1P51668 147 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM187Q14656 261 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ARIH2OSQ8N7S6 290 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM99Q8N816 258 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 LRRC75AQ8NAA5 344 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 OR4X1Q8NH49 305 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 OR51E1Q8TCB6 317 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 RNF183Q96D59 192 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ARHGAP5-AS1Q96IT6 56 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms