RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 ELK1P19419 428 aa12.06□□□□□ -0.48
CLN3-264ENST00000637985 PTBP1P26599 531 aaKnown RBP eCLIP12.06□□□□□ -0.48
CLN3-264ENST00000637985 RCVRNP35243 200 aa12.06□□□□□ -0.48
CLN3-264ENST00000637985 LPAR6P43657 344 aa12.06□□□□□ -0.48
CLN3-264ENST00000637985 ZNF585BQ52M93 769 aa12.06□□□□□ -0.48
CLN3-264ENST00000637985 MZT2AQ6P582 158 aa12.06□□□□□ -0.48
CLN3-264ENST00000637985 SNX29P2Q8IUI4 249 aa12.06□□□□□ -0.48
CLN3-264ENST00000637985 OR1L8Q8NGR8 309 aa12.06□□□□□ -0.48
CLN3-264ENST00000637985 C2CD4CQ8TF44 421 aa12.06□□□□□ -0.48
CLN3-264ENST00000637985 FCAMRQ8WWV6 532 aa12.06□□□□□ -0.48
CLN3-264ENST00000637985 AP3S1Q92572 193 aa12.06□□□□□ -0.48
CLN3-264ENST00000637985 S4R3C0 116 aa12.06□□□□□ -0.48
CLN3-264ENST00000637985 MFSD2BA6NFX1 497 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 A8MWP6 167 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 HPGDSO60760 199 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 SNAPC5O75971 98 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 KRASP01116 189 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 IFNA4P05014 189 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 CLEC3BP05452 202 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 SERPINE2P07093 398 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 RPA2P15927 270 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 CBLN1P23435 193 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 UCP3P55916 312 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 NANOS2P60321 138 aaKnown RBP12.05□□□□□ -0.48
CLN3-264ENST00000637985 ANKRD55Q3KP44 614 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 TM4SF20Q53R12 229 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 GDPD1Q8N9F7 314 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 OR10W1Q8NGF6 305 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 VN1R17PQ8TDU5 208 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 NDUFA4L2Q9NRX3 87 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 FKBP11Q9NYL4 201 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 APLNQ9ULZ1 77 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 SELENOKQ9Y6D0 94 aa12.05□□□□□ -0.48
CLN3-264ENST00000637985 ZNF320A2RRD8 509 aa12.04□□□□□ -0.48
CLN3-264ENST00000637985 RTL8CO15255 209 aa12.04□□□□□ -0.48
CLN3-264ENST00000637985 GABARAPO95166 117 aa12.04□□□□□ -0.48
CLN3-264ENST00000637985 OR13C7P0DN81 318 aa12.04□□□□□ -0.48
CLN3-264ENST00000637985 G6PCP35575 357 aa12.04□□□□□ -0.48
CLN3-264ENST00000637985 RBMS2Q15434 407 aaKnown RBP12.04□□□□□ -0.48
CLN3-264ENST00000637985 ZNF57Q68EA5 555 aaPredicted RBP12.04□□□□□ -0.48
CLN3-264ENST00000637985 SLC38A6Q8IZM9 456 aa12.04□□□□□ -0.48
CLN3-264ENST00000637985 ZNF502Q8TBZ5 544 aa12.04□□□□□ -0.48
CLN3-264ENST00000637985 LSM10Q969L4 123 aaKnown RBP12.04□□□□□ -0.48
CLN3-264ENST00000637985 TSC22D3Q99576 134 aa12.04□□□□□ -0.48
CLN3-264ENST00000637985 MFFQ9GZY8 342 aa12.04□□□□□ -0.48
CLN3-264ENST00000637985 PRNDQ9UKY0 176 aa12.04□□□□□ -0.48
CLN3-264ENST00000637985 OR51B2Q9Y5P1 312 aa12.04□□□□□ -0.48
CLN3-264ENST00000637985 KIR2DL5BA0A0G2JN68 375 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 KIR2DL5BA0A0G2JPC4 375 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 TMEM213A2RRL7 107 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 FAM25AB3EWG3 89 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 FAM25CB3EWG5 89 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 FAM25GB3EWG6 89 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 ZNF182P17025 639 aaPredicted RBP12.03□□□□□ -0.48
CLN3-264ENST00000637985 WT1-ASQ06250 92 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 CTF1Q16619 201 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 PHLDA2Q53GA4 152 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 KIR2DL5AQ8N109 375 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 OR1L6Q8NGR2 347 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 OR5B3Q8NH48 314 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 KIR2DL5BQ8NHK3 375 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 C11orf45Q8TAV5 145 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 CACNG8Q8WXS5 425 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 ATP6V0BQ99437 205 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 FBXL17Q9UF56 701 aa12.03□□□□□ -0.48
CLN3-264ENST00000637985 SMIM18P0DKX4 95 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 GPR183P32249 361 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 ELLP55199 621 aaPredicted RBP12.02□□□□□ -0.49
CLN3-264ENST00000637985 SLC25A24Q6NUK1 477 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 PLET1Q6UQ28 207 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 TBC1D26Q86UD7 250 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 STPG3Q8N7X2 389 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 C15orf40Q8WUR7 153 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 MARC2Q969Z3 335 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 TMEM56Q96MV1 263 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 HINT2Q9BX68 163 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 ZNF436Q9C0F3 470 aaPredicted RBP12.02□□□□□ -0.49
CLN3-264ENST00000637985 NAA50Q9GZZ1 169 aaKnown RBP12.02□□□□□ -0.49
CLN3-264ENST00000637985 MLXQ9UH92 298 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 NSG2Q9Y328 171 aa12.02□□□□□ -0.49
CLN3-264ENST00000637985 F11RQ9Y624 299 aaKnown RBP12.02□□□□□ -0.49
CLN3-264ENST00000637985 C15orf61A6NNL5 157 aa12.01□□□□□ -0.49
CLN3-264ENST00000637985 SCAF4O95104 1147 aaKnown RBP12.01□□□□□ -0.49
CLN3-264ENST00000637985 ZNF575Q86XF7 245 aa12.01□□□□□ -0.49
CLN3-264ENST00000637985 UXS1Q8NBZ7 420 aa12.01□□□□□ -0.49
CLN3-264ENST00000637985 TMEM14BQ9NUH8 114 aa12.01□□□□□ -0.49
CLN3-264ENST00000637985 MRPL27Q9P0M9 148 aaKnown RBP12.01□□□□□ -0.49
CLN3-264ENST00000637985 UFC1Q9Y3C8 167 aa12.01□□□□□ -0.49
CLN3-264ENST00000637985 TGOLN2O43493 480 aa12□□□□□ -0.49
CLN3-264ENST00000637985 C8orf88P0DMB2 117 aa12□□□□□ -0.49
CLN3-264ENST00000637985 GPR107Q5VW38 600 aa12□□□□□ -0.49
CLN3-264ENST00000637985 SPSB3Q6PJ21 355 aa12□□□□□ -0.49
CLN3-264ENST00000637985 UNQ9165/PRO28630Q6UXU0 137 aa12□□□□□ -0.49
CLN3-264ENST00000637985 BSCL2Q96G97 398 aaPredicted RBP12□□□□□ -0.49
CLN3-264ENST00000637985 ZNF486Q96H40 463 aaPredicted RBP12□□□□□ -0.49
CLN3-264ENST00000637985 SEC22AQ96IW7 307 aa12□□□□□ -0.49
CLN3-264ENST00000637985 EXTL2Q9UBQ6 330 aa12□□□□□ -0.49
CLN3-264ENST00000637985 KLK11Q9UBX7 282 aa12□□□□□ -0.49
CLN3-264ENST00000637985 TRAV25A0A0B4J276 109 aa11.99□□□□□ -0.49
CLN3-264ENST00000637985 IGLL5B9A064 214 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms