RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 GATAD1Q8WUU5 269 aa14.25□□□□□ -0.13
CLN3-262ENST00000637699 RNF2Q99496 336 aa14.25□□□□□ -0.13
CLN3-262ENST00000637699 HINT2Q9BX68 163 aa14.25□□□□□ -0.13
CLN3-262ENST00000637699 SMPXQ9UHP9 88 aa14.25□□□□□ -0.13
CLN3-262ENST00000637699 RYR1P21817 5038 aa14.25□□□□□ -0.13
CLN3-262ENST00000637699 IGKV3-7A0A075B6H7 116 aa14.24□□□□□ -0.13
CLN3-262ENST00000637699 ADMP35318 185 aa14.24□□□□□ -0.13
CLN3-262ENST00000637699 Q56UQ5 140 aa14.24□□□□□ -0.13
CLN3-262ENST00000637699 AUNIPQ9H7T9 357 aa14.24□□□□□ -0.13
CLN3-262ENST00000637699 PLEKHA2Q9HB19 425 aa14.24□□□□□ -0.13
CLN3-262ENST00000637699 IGHV3-49A0A0A0MS15 119 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 A0A0A6YYH2 397 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 A6NJ64 397 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 C15orf62A8K5M9 175 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 F8W735 103 aaPredicted RBP14.23□□□□□ -0.13
CLN3-262ENST00000637699 DEFB4AO15263 64 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 AADACL3Q5VUY0 350 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 THOC7Q6I9Y2 204 aaKnown RBP14.23□□□□□ -0.13
CLN3-262ENST00000637699 ZNF818PQ6ZRF7 136 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 HSD17B13Q7Z5P4 300 aaPredicted RBP14.23□□□□□ -0.13
CLN3-262ENST00000637699 OR1L8Q8NGR8 309 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 C2CD4CQ8TF44 421 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 RHPN1-AS1Q9BWJ2 59 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 VCX3AQ9NNX9 186 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 DIABLOQ9NR28 239 aa14.23□□□□□ -0.13
CLN3-262ENST00000637699 F11RQ9Y624 299 aaKnown RBP14.23□□□□□ -0.13
CLN3-262ENST00000637699 K7EIM0 57 aa14.22□□□□□ -0.13
CLN3-262ENST00000637699 TMEM17Q86X19 198 aa14.22□□□□□ -0.13
CLN3-262ENST00000637699 HOGA1Q86XE5 327 aa14.22□□□□□ -0.13
CLN3-262ENST00000637699 C11orf68Q9H3H3 251 aaKnown RBP14.22□□□□□ -0.13
CLN3-262ENST00000637699 IGHV7-4-1A0A0J9YVY3 117 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 CHEK1O14757 476 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 TMEM127O75204 238 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 YIF1AO95070 293 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 CTSGP08311 255 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 FGF2P09038 288 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 CMC4P56277 68 aaPredicted RBP14.21□□□□□ -0.13
CLN3-262ENST00000637699 ERVK-16P61578 105 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 CROCCP3Q8IVE0 287 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 GBGT1Q8N5D6 347 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 TMEM116Q8NCL8 245 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 LSM10Q969L4 123 aaKnown RBP14.21□□□□□ -0.13
CLN3-262ENST00000637699 ATP6V0BQ99437 205 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 NDUFA4L2Q9NRX3 87 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 COMMD9Q9P000 198 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 NSG2Q9Y328 171 aa14.21□□□□□ -0.13
CLN3-262ENST00000637699 XRCC3O43542 346 aa14.2□□□□□ -0.14
CLN3-262ENST00000637699 OR51B2Q9Y5P1 312 aa14.2□□□□□ -0.14
CLN3-262ENST00000637699 IGHV3OR16-13A0A075B7E8 117 aa14.19□□□□□ -0.14
CLN3-262ENST00000637699 IGHV3-74A0A0B4J1X5 117 aa14.19□□□□□ -0.14
CLN3-262ENST00000637699 MEIS3P1A6NDR6 274 aa14.19□□□□□ -0.14
CLN3-262ENST00000637699 MARCH11A6NNE9 402 aa14.19□□□□□ -0.14
CLN3-262ENST00000637699 IGLL5B9A064 214 aa14.19□□□□□ -0.14
CLN3-262ENST00000637699 CA1P00915 261 aaPredicted RBP14.19□□□□□ -0.14
CLN3-262ENST00000637699 UBE2NLQ5JXB2 153 aa14.19□□□□□ -0.14
CLN3-262ENST00000637699 SAMD12Q8N8I0 201 aa14.19□□□□□ -0.14
CLN3-262ENST00000637699 GIMAP1Q8WWP7 306 aa14.19□□□□□ -0.14
CLN3-262ENST00000637699 S100A16Q96FQ6 103 aaKnown RBP14.19□□□□□ -0.14
CLN3-262ENST00000637699 ZNF414Q96IQ9 312 aa14.19□□□□□ -0.14
CLN3-262ENST00000637699 CMTM3Q96MX0 182 aa14.19□□□□□ -0.14
CLN3-262ENST00000637699 FUNDC2Q9BWH2 189 aa14.19□□□□□ -0.14
CLN3-262ENST00000637699 NUPL2O15504 423 aaKnown RBP14.18□□□□□ -0.14
CLN3-262ENST00000637699 KRASP01116 189 aa14.18□□□□□ -0.14
CLN3-262ENST00000637699 GNRHRP30968 328 aa14.18□□□□□ -0.14
CLN3-262ENST00000637699 TCTAP57738 103 aa14.18□□□□□ -0.14
CLN3-262ENST00000637699 NCS1P62166 190 aa14.18□□□□□ -0.14
CLN3-262ENST00000637699 RELQ04864 619 aaPredicted RBP14.18□□□□□ -0.14
CLN3-262ENST00000637699 SLC25A46Q96AG3 418 aa14.18□□□□□ -0.14
CLN3-262ENST00000637699 APLNQ9ULZ1 77 aa14.18□□□□□ -0.14
CLN3-262ENST00000637699 FAT2Q9NYQ8 4349 aa14.18□□□□□ -0.14
CLN3-262ENST00000637699 TRAV14DV4A0A0A6YYC5 116 aa14.17□□□□□ -0.14
CLN3-262ENST00000637699 SNAPC5O75971 98 aa14.17□□□□□ -0.14
CLN3-262ENST00000637699 RLN1P04808 185 aa14.17□□□□□ -0.14
CLN3-262ENST00000637699 LPAR6P43657 344 aa14.17□□□□□ -0.14
CLN3-262ENST00000637699 HERV-K104P61576 105 aa14.17□□□□□ -0.14
CLN3-262ENST00000637699 VBP1P61758 197 aa14.17□□□□□ -0.14
CLN3-262ENST00000637699 TMEM187Q14656 261 aa14.17□□□□□ -0.14
CLN3-262ENST00000637699 FAM90A2PQ658T7 463 aa14.17□□□□□ -0.14
CLN3-262ENST00000637699 OR5AP2Q8NGF4 316 aa14.17□□□□□ -0.14
CLN3-262ENST00000637699 DNAH2Q9P225 4427 aa14.16□□□□□ -0.14
CLN3-262ENST00000637699 F2RP25116 425 aa14.16□□□□□ -0.14
CLN3-262ENST00000637699 G6PCP35575 357 aa14.16□□□□□ -0.14
CLN3-262ENST00000637699 PAFAH1B2P68402 229 aa14.16□□□□□ -0.14
CLN3-262ENST00000637699 TCF24Q7RTU0 167 aa14.16□□□□□ -0.14
CLN3-262ENST00000637699 FCAMRQ8WWV6 532 aa14.16□□□□□ -0.14
CLN3-262ENST00000637699 MISP3Q96FF7 219 aa14.16□□□□□ -0.14
CLN3-262ENST00000637699 OR10C1Q96KK4 312 aa14.16□□□□□ -0.14
CLN3-262ENST00000637699 TMEM56Q96MV1 263 aa14.16□□□□□ -0.14
CLN3-262ENST00000637699 PGLYRP1O75594 196 aaPredicted RBP14.15□□□□□ -0.14
CLN3-262ENST00000637699 IGHV3-48P01763 117 aa14.15□□□□□ -0.14
CLN3-262ENST00000637699 EIF4EP06730 217 aaKnown RBP14.15□□□□□ -0.14
CLN3-262ENST00000637699 SMIM18P0DKX4 95 aa14.15□□□□□ -0.14
CLN3-262ENST00000637699 CBX5P45973 191 aa14.15□□□□□ -0.14
CLN3-262ENST00000637699 MFAP4P55083 255 aa14.15□□□□□ -0.14
CLN3-262ENST00000637699 TAS2R20P59543 309 aa14.15□□□□□ -0.14
CLN3-262ENST00000637699 TMEM69Q5SWH9 247 aa14.15□□□□□ -0.14
CLN3-262ENST00000637699 LEMD1Q68G75 181 aa14.15□□□□□ -0.14
CLN3-262ENST00000637699 BORCS5Q969J3 196 aa14.15□□□□□ -0.14
CLN3-262ENST00000637699 DGCR14Q96DF8 476 aaKnown RBP14.15□□□□□ -0.14
CLN3-262ENST00000637699 DNAH17Q9UFH2 4485 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms