RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 NXF5Q9H1B4 397 aaKnown RBP5.69□□□□□ -1.5
SCN1A-213ENST00000636759 TNRC6BQ9UPQ9 1833 aaKnown RBP5.69□□□□□ -1.5
SCN1A-213ENST00000636759 FRYLO94915 3013 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 TRGV10A0A0A0MS01 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 KIR2DS1A0A191URI9 304 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 GAGE12JA6NER3 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 C3orf80F5H4A9 247 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 PRKNO60260 465 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-213ENST00000636759 GAGE7O76087 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 GAGE12FP0CL80 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 GAGE12GP0CL81 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 GAGE12IP0CL82 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 CT45A6P0DMU7 189 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 CT45A5P0DMU8 189 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 CT45A7P0DMV0 189 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 G6PCP35575 357 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 KIR2DS4P43632 304 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 CLRN1P58418 232 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 GNG3P63215 75 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 GAGE4Q13068 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 KIR2DS1Q14954 304 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 GUSBP1Q15486 140 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 GAGE13Q4V321 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 CT45A1Q5HYN5 189 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 RASL11AQ6T310 242 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 TMEM14EPQ6UXP3 125 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 LINC00696Q6ZRV3 163 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 ANKRD37Q7Z713 158 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 CT45A3Q8NHU0 189 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 CHRNA10Q9GZZ6 450 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 IGKV1D-13A0A0B4J2D9 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 C17orf51A8MQB3 221 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 MT-ATP8P03928 68 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 IGKV1-13P0DP09 117 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 CFHR2P36980 270 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 FASLGP48023 281 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 ARL4DP49703 201 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 RNPS1Q15287 305 aaKnown RBP5.69□□□□□ -1.5
SCN1A-213ENST00000636759 TM4SF20Q53R12 229 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 LINC00173Q6ZV60 143 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 SPEM1Q8N4L4 309 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 CHCHD1Q96BP2 118 aaKnown RBP5.69□□□□□ -1.5
SCN1A-213ENST00000636759 C20orf78Q9BR46 151 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 GCM1Q9NP62 436 aa5.69□□□□□ -1.5
SCN1A-213ENST00000636759 PRR33A8MZF0 331 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 VDAC2P45880 294 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-213ENST00000636759 CATR1Q13166 79 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 KLRD1Q13241 179 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 VWC2Q2TAL6 325 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 GCSAMLQ5JQS6 135 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 ACP7Q6ZNF0 438 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 GCSAMQ8N6F7 178 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 OR1L1Q8NH94 360 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 KCNK17Q96T54 332 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 A0A1W2PRD5 423 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 A0A1W2PRF3 423 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 A0A1W2PRM7 423 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 LIPT2A6NK58 231 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 FAM90A26D6RGX4 464 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 HLA-DQA1Q5Y7H0 255 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 TUSC5Q8IXB3 177 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 STARD5Q9NSY2 213 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 IGHV1-24A0A0C4DH33 117 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 KIR2DL2P43627 348 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-213ENST00000636759 HHEXQ03014 270 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 H1FNTQ75WM6 255 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-213ENST00000636759 TMEM116Q8NCL8 245 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 LRRC29Q8WV35 223 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 C1QTNF5Q9BXJ0 243 aa5.68□□□□□ -1.5
SCN1A-213ENST00000636759 VPS13AQ96RL7 3174 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 RTTNQ86VV8 2226 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 VWC2LB2RUY7 222 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 DHHO43323 396 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 SCTP09683 121 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 FOXA3P55318 350 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-213ENST00000636759 ZNF542PQ5EBM4 170 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 PRR31Q5SQ13 230 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 Q6ZUT4 128 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 NUDT22Q9BRQ3 303 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 SIGLEC8Q9NYZ4 499 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 LILRA5A6NI73 299 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 NPIPB5A8MRT5 1133 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 SMAD7O15105 426 aaKnown RBP5.67□□□□□ -1.5
SCN1A-213ENST00000636759 IGKV3-11P04433 115 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 CDAP32320 146 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 SSBP3Q9BWW4 388 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-213ENST00000636759 VCX2Q9H322 139 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 PLEKHA3Q9HB20 300 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 PRTFDC1Q9NRG1 225 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 LIN7CQ9NUP9 197 aaKnown RBP5.67□□□□□ -1.5
SCN1A-213ENST00000636759 WNT16Q9UBV4 365 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 YTHDF2Q9Y5A9 579 aaKnown RBP5.67□□□□□ -1.5
SCN1A-213ENST00000636759 F11RQ9Y624 299 aaKnown RBP5.67□□□□□ -1.5
SCN1A-213ENST00000636759 IGKV3D-11A0A0A0MRZ8 115 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 SMIM27A0A1W2PRY6 76 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 H3BMG7 143 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 CLDN14O95500 239 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 CT45A10P0DMU9 189 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 CD27P26842 260 aa5.67□□□□□ -1.5
SCN1A-213ENST00000636759 GCHFRP30047 84 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms