RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 ZNF414Q96IQ9 312 aa11.94□□□□□ -0.5
CLN3-246ENST00000636228 IGKV3-7A0A075B6H7 116 aa11.93□□□□□ -0.5
CLN3-246ENST00000636228 UBE2CO00762 179 aa11.93□□□□□ -0.5
CLN3-246ENST00000636228 SNAPC5O75971 98 aa11.93□□□□□ -0.5
CLN3-246ENST00000636228 CTSGP08311 255 aa11.93□□□□□ -0.5
CLN3-246ENST00000636228 SPSB3Q6PJ21 355 aa11.93□□□□□ -0.5
CLN3-246ENST00000636228 HSD17B13Q7Z5P4 300 aaPredicted RBP11.93□□□□□ -0.5
CLN3-246ENST00000636228 TSPAN14Q8NG11 270 aa11.93□□□□□ -0.5
CLN3-246ENST00000636228 S100A16Q96FQ6 103 aaKnown RBP11.93□□□□□ -0.5
CLN3-246ENST00000636228 RNF2Q99496 336 aa11.93□□□□□ -0.5
CLN3-246ENST00000636228 FXYD6Q9H0Q3 95 aa11.93□□□□□ -0.5
CLN3-246ENST00000636228 IGHV3OR16-13A0A075B7E8 117 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 IGHV3-74A0A0B4J1X5 117 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 KIR2DL5BA0A0G2JN68 375 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 KIR2DL5BA0A0G2JPC4 375 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 OR4C46A6NHA9 309 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 K7EMT4 169 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 YIF1AO95070 293 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 IGHV3-48P01763 117 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 TAS2R20P59543 309 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 LSM3P62310 102 aaKnown RBP11.92□□□□□ -0.5
CLN3-246ENST00000636228 PHLDA2Q53GA4 152 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 KIR2DL5AQ8N109 375 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 RPP25LQ8N5L8 163 aaKnown RBP11.92□□□□□ -0.5
CLN3-246ENST00000636228 OR5H2Q8NGV7 314 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 KIR2DL5BQ8NHK3 375 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 BORCS5Q969J3 196 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 MAP6D1Q9H9H5 199 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 SMPXQ9UHP9 88 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 ANAPC10Q9UM13 185 aa11.92□□□□□ -0.5
CLN3-246ENST00000636228 GPR31O00270 319 aa11.91□□□□□ -0.5
CLN3-246ENST00000636228 HLA-DMAP28067 261 aa11.91□□□□□ -0.5
CLN3-246ENST00000636228 RPS19P39019 145 aaKnown RBP11.91□□□□□ -0.5
CLN3-246ENST00000636228 LYSMD2Q8IV50 215 aa11.91□□□□□ -0.5
CLN3-246ENST00000636228 CMTM1Q8IZ96 169 aa11.91□□□□□ -0.5
CLN3-246ENST00000636228 SAMD12Q8N8I0 201 aa11.91□□□□□ -0.5
CLN3-246ENST00000636228 OR6F1Q8NGZ6 308 aa11.91□□□□□ -0.5
CLN3-246ENST00000636228 SLC25A46Q96AG3 418 aa11.91□□□□□ -0.5
CLN3-246ENST00000636228 MISP3Q96FF7 219 aa11.91□□□□□ -0.5
CLN3-246ENST00000636228 GALNT14Q96FL9 552 aa11.91□□□□□ -0.5
CLN3-246ENST00000636228 RHPN1-AS1Q9BWJ2 59 aa11.91□□□□□ -0.5
CLN3-246ENST00000636228 IGHV7-4-1A0A0J9YVY3 117 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 C15orf62A8K5M9 175 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 CHEK1O14757 476 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 NAT1P18440 290 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 HRH1P35367 487 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 KMT2AQ03164 3969 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 UBE2NLQ5JXB2 153 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 TMEM69Q5SWH9 247 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 GBGT1Q8N5D6 347 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 TMEM116Q8NCL8 245 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 TMEM56Q96MV1 263 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 PRNDQ9UKY0 176 aa11.9□□□□□ -0.5
CLN3-246ENST00000636228 KLK5Q9Y337 293 aaPredicted RBP11.9□□□□□ -0.5
CLN3-246ENST00000636228 C15orf61A6NNL5 157 aa11.89□□□□□ -0.51
CLN3-246ENST00000636228 I3L2K1 104 aa11.89□□□□□ -0.51
CLN3-246ENST00000636228 DEDDO75618 318 aa11.89□□□□□ -0.51
CLN3-246ENST00000636228 PRSS3P35030 304 aa11.89□□□□□ -0.51
CLN3-246ENST00000636228 PHLDA1Q8WV24 401 aaPredicted RBP11.89□□□□□ -0.51
CLN3-246ENST00000636228 TMEM14BQ9NUH8 114 aa11.89□□□□□ -0.51
CLN3-246ENST00000636228 FRAS1Q86XX4 4008 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 A0A087WXM4 84 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 NUPL2O15504 423 aaKnown RBP11.88□□□□□ -0.51
CLN3-246ENST00000636228 MT-CO2P00403 227 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 IGKV1-39P01597 117 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 IGKV1D-39P04432 117 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 SMIM18P0DKX4 95 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 MFAP4P55083 255 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 TAS2R46P59540 309 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 SPINK9Q5DT21 86 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 TBC1D26Q86UD7 250 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 OR1P1Q8NH06 330 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 PINX1Q96BK5 328 aaKnown RBP11.88□□□□□ -0.51
CLN3-246ENST00000636228 ATP6V0BQ99437 205 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 CSTL1Q9H114 145 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 FKBP11Q9NYL4 201 aa11.88□□□□□ -0.51
CLN3-246ENST00000636228 TRAV14DV4A0A0A6YYC5 116 aa11.87□□□□□ -0.51
CLN3-246ENST00000636228 EIF4EP06730 217 aaKnown RBP11.87□□□□□ -0.51
CLN3-246ENST00000636228 NANOS2P60321 138 aaKnown RBP11.87□□□□□ -0.51
CLN3-246ENST00000636228 TSPAN5P62079 268 aa11.87□□□□□ -0.51
CLN3-246ENST00000636228 RELQ04864 619 aaPredicted RBP11.87□□□□□ -0.51
CLN3-246ENST00000636228 IZUMO4Q1ZYL8 232 aa11.87□□□□□ -0.51
CLN3-246ENST00000636228 CADM3Q8N126 398 aa11.87□□□□□ -0.51
CLN3-246ENST00000636228 LILRB2Q8N423 598 aa11.87□□□□□ -0.51
CLN3-246ENST00000636228 OR4A16Q8NH70 328 aa11.87□□□□□ -0.51
CLN3-246ENST00000636228 SEC22AQ96IW7 307 aa11.87□□□□□ -0.51
CLN3-246ENST00000636228 TSC22D3Q99576 134 aa11.87□□□□□ -0.51
CLN3-246ENST00000636228 RARRES2Q99969 163 aa11.87□□□□□ -0.51
CLN3-246ENST00000636228 DNAH10Q8IVF4 4471 aa11.86□□□□□ -0.51
CLN3-246ENST00000636228 IGHV3-66A0A0C4DH42 116 aa11.86□□□□□ -0.51
CLN3-246ENST00000636228 MPTX1A8MV57 137 aa11.86□□□□□ -0.51
CLN3-246ENST00000636228 DEFB4AO15263 64 aa11.86□□□□□ -0.51
CLN3-246ENST00000636228 TMEM127O75204 238 aa11.86□□□□□ -0.51
CLN3-246ENST00000636228 APOHP02749 345 aaPredicted RBP11.86□□□□□ -0.51
CLN3-246ENST00000636228 ATF4P18848 351 aaPredicted RBP11.86□□□□□ -0.51
CLN3-246ENST00000636228 FAM90A2PQ658T7 463 aa11.86□□□□□ -0.51
CLN3-246ENST00000636228 H2BFWTQ7Z2G1 175 aa11.86□□□□□ -0.51
CLN3-246ENST00000636228 CROCCP3Q8IVE0 287 aa11.86□□□□□ -0.51
CLN3-246ENST00000636228 TMEM217Q8N7C4 229 aa11.86□□□□□ -0.51
CLN3-246ENST00000636228 MRGPRFQ96AM1 343 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms