RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TMEM186Q96B77 213 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 OCIAD2Q56VL3 154 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 OR10J6PQ8NGY7 276 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 RNASE7Q9H1E1 156 aaKnown RBP7.54□□□□□ -1.2
VCL-206ENST00000623461 POLR3KQ9Y2Y1 108 aaPredicted RBP7.54□□□□□ -1.2
VCL-206ENST00000623461 FER1L5A0AVI2 2057 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 FANCMQ8IYD8 2048 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 hCG_38984A0A1B0GV85 526 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 DLX6P56179 175 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 HS3ST3B1Q9Y662 390 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 NLRC5Q86WI3 1866 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 HBDP02042 147 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 IGFBP2P18065 325 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 CRXO43186 299 aaPredicted RBP7.54□□□□□ -1.2
VCL-206ENST00000623461 C9orf50Q5SZB4 431 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 SPINK14Q6IE38 97 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 CIARTQ8N365 385 aaPredicted RBP7.54□□□□□ -1.2
VCL-206ENST00000623461 ZNF479Q96JC4 524 aa7.54□□□□□ -1.2
VCL-206ENST00000623461 PPIHO43447 177 aaKnown RBP7.53□□□□□ -1.2
VCL-206ENST00000623461 NAPSAO96009 420 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 PRSS2P07478 247 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 COX6B1P14854 86 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 LINC01551Q86U37 167 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 TMEM256Q8N2U0 113 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 LINC00470Q9BZP3 86 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 CST9LQ9H4G1 147 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 COL4A1P02462 1669 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 FAM90A9PA6NNJ1 464 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 LINC00271P0C7V0 271 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 PSG1P11464 419 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 MIR17HGQ75NE6 70 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 TPRX1Q8N7U7 411 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 NUP37Q8NFH4 326 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 SMPXQ9UHP9 88 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 A0A0A6YYD4 124 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 IGHV3-21A0A0B4J1V1 117 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 A8MWV9 139 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 DPM2O94777 84 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 MAGEA5P43359 124 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 MFAP4P55083 255 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 TM4SF20Q53R12 229 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 CCDC144NLQ6NUI1 221 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 DYNLRB2Q8TF09 96 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 TSKUQ8WUA8 353 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 NPIPB3Q92617 1050 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 IFNL4K9M1U5 179 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 OR4C13Q8NGP0 309 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 SCARF2Q96GP6 870 aaPredicted RBP7.53□□□□□ -1.2
VCL-206ENST00000623461 C18orf15Q96N68 181 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 KIF26BQ2KJY2 2108 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 KIR2DL4Q99706 377 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 PHLDA3Q9Y5J5 127 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 FCGR2BP31994 310 aaPredicted RBP7.53□□□□□ -1.2
VCL-206ENST00000623461 TMEM144Q7Z5S9 345 aa7.53□□□□□ -1.2
VCL-206ENST00000623461 FAM166AQ6J272 317 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 SYNGR3O43761 229 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 IGKV3-11P04433 115 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 C3orf79P0CE67 100 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 TDGF1P13385 188 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 Q0VG73 95 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 GAGE2BQ13066 116 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 GAGE2EQ4V326 116 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 GAGE2DQ9UEU5 116 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 RABAC1Q9UI14 185 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 TRAV8-4A0A0B4J246 113 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 PRR32B1ATL7 298 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 AGFG2O95081 481 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 ZNF501Q96CX3 271 aaPredicted RBP7.52□□□□□ -1.21
VCL-206ENST00000623461 MYOFQ9NZM1 2061 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 LRRC37A2A6NM11 1700 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 CFPP27918 469 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 WDR83OSQ9Y284 106 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.52□□□□□ -1.21
VCL-206ENST00000623461 CD3EP07766 207 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 PRSS8Q16651 343 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 NRN1LQ496H8 165 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 C1orf185Q5T7R7 199 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 Q6ZS52 159 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 SCGB3A1Q96QR1 104 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 HCP5Q6MZN7 132 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 VSIRQ9H7M9 311 aa7.52□□□□□ -1.21
VCL-206ENST00000623461 A0A0G2JMM0 328 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 A0A1W2PPB8 328 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 KIR3DP1A8MWS1 328 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 J3KRW8 73 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 CT55Q8WUE5 264 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 OTORQ9NRC9 128 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 C17orf98A8MV24 154 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 E9PQ18 207 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 REG1BP48304 166 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 SGK494Q96LW2 274 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 METTL26Q96S19 204 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 PLXNA3P51805 1871 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 PPIAL4EA0A075B759 164 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 MMP23AO75900 390 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 PPBPP02775 128 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 NPSP0C0P6 89 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 PPIAL4FP0DN26 164 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 ZNF585BQ52M93 769 aa7.51□□□□□ -1.21
VCL-206ENST00000623461 TMEM171Q8WVE6 324 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms