RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 IGHV3-21A0A0B4J1V1 117 aa19.6■□□□□ 0.73
PNKP-216ENST00000601816 OR2T8A6NH00 312 aa19.6■□□□□ 0.73
PNKP-216ENST00000601816 ELLP55199 621 aaPredicted RBP19.6■□□□□ 0.73
PNKP-216ENST00000601816 PIGPP57054 158 aa19.6■□□□□ 0.73
PNKP-216ENST00000601816 SPCS2Q15005 226 aa19.6■□□□□ 0.73
PNKP-216ENST00000601816 BTNL8Q6UX41 500 aa19.6■□□□□ 0.73
PNKP-216ENST00000601816 TMEM229BQ8NBD8 167 aa19.6■□□□□ 0.73
PNKP-216ENST00000601816 BSCL2Q96G97 398 aaPredicted RBP19.6■□□□□ 0.73
PNKP-216ENST00000601816 ATP6V0BQ99437 205 aa19.6■□□□□ 0.73
PNKP-216ENST00000601816 CEPT1Q9Y6K0 416 aa19.6■□□□□ 0.73
PNKP-216ENST00000601816 OR11H12B2RN74 326 aa19.59■□□□□ 0.73
PNKP-216ENST00000601816 PPP5CP53041 499 aa19.59■□□□□ 0.73
PNKP-216ENST00000601816 TAS2R19P59542 299 aa19.59■□□□□ 0.73
PNKP-216ENST00000601816 SPSB3Q6PJ21 355 aa19.59■□□□□ 0.73
PNKP-216ENST00000601816 SLC16A13Q7RTY0 426 aa19.59■□□□□ 0.73
PNKP-216ENST00000601816 CLVS1Q8IUQ0 354 aaPredicted RBP19.59■□□□□ 0.73
PNKP-216ENST00000601816 DEFB125Q8N687 156 aa19.59■□□□□ 0.73
PNKP-216ENST00000601816 OR1P1Q8NH06 330 aa19.59■□□□□ 0.73
PNKP-216ENST00000601816 SCARB1Q8WTV0 552 aa19.59■□□□□ 0.73
PNKP-216ENST00000601816 TMEM190Q8WZ59 177 aa19.59■□□□□ 0.73
PNKP-216ENST00000601816 MRPL27Q9P0M9 148 aaKnown RBP19.59■□□□□ 0.73
PNKP-216ENST00000601816 GABARAPH6UMI1 98 aa19.58■□□□□ 0.72
PNKP-216ENST00000601816 K7EIM0 57 aa19.58■□□□□ 0.72
PNKP-216ENST00000601816 RAB3DO95716 219 aa19.58■□□□□ 0.72
PNKP-216ENST00000601816 C8orf88P0DMB2 117 aa19.58■□□□□ 0.72
PNKP-216ENST00000601816 LINC00322Q6ZN03 302 aaPredicted RBP19.58■□□□□ 0.72
PNKP-216ENST00000601816 OR4D10Q8NGI6 311 aa19.58■□□□□ 0.72
PNKP-216ENST00000601816 WFDC10AQ9H1F0 79 aa19.58■□□□□ 0.72
PNKP-216ENST00000601816 CTDSP2O14595 271 aa19.57■□□□□ 0.72
PNKP-216ENST00000601816 SCAF4O95104 1147 aaKnown RBP19.57■□□□□ 0.72
PNKP-216ENST00000601816 CD74P04233 296 aa19.57■□□□□ 0.72
PNKP-216ENST00000601816 MRPS10P82664 201 aaKnown RBP19.57■□□□□ 0.72
PNKP-216ENST00000601816 PRCDQ00LT1 54 aa19.57■□□□□ 0.72
PNKP-216ENST00000601816 SCGB2B2Q4G0G5 96 aa19.57■□□□□ 0.72
PNKP-216ENST00000601816 Q56UQ5 140 aa19.57■□□□□ 0.72
PNKP-216ENST00000601816 OR2C3Q8N628 320 aa19.57■□□□□ 0.72
PNKP-216ENST00000601816 UBAC2Q8NBM4 344 aa19.57■□□□□ 0.72
PNKP-216ENST00000601816 RAB2BQ8WUD1 216 aa19.57■□□□□ 0.72
PNKP-216ENST00000601816 TP53RKQ96S44 253 aa19.57■□□□□ 0.72
PNKP-216ENST00000601816 SRD5A3Q9H8P0 318 aa19.57■□□□□ 0.72
PNKP-216ENST00000601816 HSPE1P61604 102 aaKnown RBP19.56■□□□□ 0.72
PNKP-216ENST00000601816 CASC10Q5T4H9 136 aa19.56■□□□□ 0.72
PNKP-216ENST00000601816 STEAP1BQ6NZ63 245 aa19.56■□□□□ 0.72
PNKP-216ENST00000601816 CCDC71LQ8N9Z2 235 aa19.56■□□□□ 0.72
PNKP-216ENST00000601816 OR52B4Q8NGK2 314 aa19.56■□□□□ 0.72
PNKP-216ENST00000601816 TERB2Q8NHR7 220 aa19.56■□□□□ 0.72
PNKP-216ENST00000601816 ZFAND1Q8TCF1 268 aa19.56■□□□□ 0.72
PNKP-216ENST00000601816 ISOC1Q96CN7 298 aa19.56■□□□□ 0.72
PNKP-216ENST00000601816 COPZ2Q9P299 210 aa19.56■□□□□ 0.72
PNKP-216ENST00000601816 DNAH7Q8WXX0 4024 aa19.55■□□□□ 0.72
PNKP-216ENST00000601816 TRAV25A0A0B4J276 109 aa19.55■□□□□ 0.72
PNKP-216ENST00000601816 C3orf85A0A1B0GTC6 90 aa19.55■□□□□ 0.72
PNKP-216ENST00000601816 F8W735 103 aaPredicted RBP19.55■□□□□ 0.72
PNKP-216ENST00000601816 LYL1P12980 280 aa19.55■□□□□ 0.72
PNKP-216ENST00000601816 AKR1C2P52895 323 aa19.55■□□□□ 0.72
PNKP-216ENST00000601816 SSBP1Q04837 148 aaKnown RBP19.55■□□□□ 0.72
PNKP-216ENST00000601816 IZUMO4Q1ZYL8 232 aa19.55■□□□□ 0.72
PNKP-216ENST00000601816 ANKRD55Q3KP44 614 aa19.55■□□□□ 0.72
PNKP-216ENST00000601816 RBPMS2Q6ZRY4 209 aaKnown RBP19.55■□□□□ 0.72
PNKP-216ENST00000601816 OR13C8Q8NGS7 320 aa19.55■□□□□ 0.72
PNKP-216ENST00000601816 MISP3Q96FF7 219 aa19.55■□□□□ 0.72
PNKP-216ENST00000601816 CHRDL1Q9BU40 450 aa19.55■□□□□ 0.72
PNKP-216ENST00000601816 EDA2RQ9HAV5 297 aa19.55■□□□□ 0.72
PNKP-216ENST00000601816 DAZ1Q9NQZ3 744 aaKnown RBP19.55■□□□□ 0.72
PNKP-216ENST00000601816 GAR1Q9NY12 217 aaKnown RBP19.55■□□□□ 0.72
PNKP-216ENST00000601816 RBMY1BA6NDE4 496 aaKnown RBP19.54■□□□□ 0.72
PNKP-216ENST00000601816 RBMY1EA6NEQ0 496 aaKnown RBP19.54■□□□□ 0.72
PNKP-216ENST00000601816 NDUFA4O00483 81 aa19.54■□□□□ 0.72
PNKP-216ENST00000601816 ATG12O94817 140 aa19.54■□□□□ 0.72
PNKP-216ENST00000601816 IGKV1-5P01602 117 aa19.54■□□□□ 0.72
PNKP-216ENST00000601816 RBMY1DP0C7P1 496 aaKnown RBP19.54■□□□□ 0.72
PNKP-216ENST00000601816 ZNF114Q8NC26 417 aa19.54■□□□□ 0.72
PNKP-216ENST00000601816 BCL7BQ9BQE9 202 aa19.54■□□□□ 0.72
PNKP-216ENST00000601816 CCDC59Q9P031 241 aaKnown RBP19.54■□□□□ 0.72
PNKP-216ENST00000601816 ADMP35318 185 aa19.53■□□□□ 0.72
PNKP-216ENST00000601816 TMBIM6P55061 237 aa19.53■□□□□ 0.72
PNKP-216ENST00000601816 ERHP84090 104 aaKnown RBP19.53■□□□□ 0.72
PNKP-216ENST00000601816 MEF2DQ14814 521 aa19.53■□□□□ 0.72
PNKP-216ENST00000601816 TRIM16LQ309B1 348 aa19.53■□□□□ 0.72
PNKP-216ENST00000601816 MARCH1Q8TCQ1 289 aa19.53■□□□□ 0.72
PNKP-216ENST00000601816 SMIM4Q8WVI0 70 aa19.53■□□□□ 0.72
PNKP-216ENST00000601816 C20orf24Q9BUV8 137 aa19.53■□□□□ 0.72
PNKP-216ENST00000601816 CTSDP07339 412 aaPredicted RBP19.52■□□□□ 0.72
PNKP-216ENST00000601816 DYNC2LI1Q8TCX1 351 aa19.52■□□□□ 0.72
PNKP-216ENST00000601816 DIRAS2Q96HU8 199 aa19.52■□□□□ 0.72
PNKP-216ENST00000601816 HIPK2Q9H2X6 1198 aa19.52■□□□□ 0.72
PNKP-216ENST00000601816 C5orf66Q9H5L9 145 aa19.52■□□□□ 0.72
PNKP-216ENST00000601816 RETNQ9HD89 108 aa19.52■□□□□ 0.72
PNKP-216ENST00000601816 I3L2K1 104 aa19.51■□□□□ 0.71
PNKP-216ENST00000601816 P0C879 139 aa19.51■□□□□ 0.71
PNKP-216ENST00000601816 MFAP4P55083 255 aa19.51■□□□□ 0.71
PNKP-216ENST00000601816 IL18Q14116 193 aa19.51■□□□□ 0.71
PNKP-216ENST00000601816 SP6Q3SY56 376 aa19.51■□□□□ 0.71
PNKP-216ENST00000601816 SPINK9Q5DT21 86 aa19.51■□□□□ 0.71
PNKP-216ENST00000601816 FAAP20Q6NZ36 180 aa19.51■□□□□ 0.71
PNKP-216ENST00000601816 CTDSPLO15194 276 aa19.5■□□□□ 0.71
PNKP-216ENST00000601816 NUPL2O15504 423 aaKnown RBP19.5■□□□□ 0.71
PNKP-216ENST00000601816 NOL3O60936 208 aaKnown RBP19.5■□□□□ 0.71
PNKP-216ENST00000601816 B3GALNT1O75752 331 aa19.5■□□□□ 0.71
PNKP-216ENST00000601816 MT-CO2P00403 227 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms