RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TMED4Q7Z7H5 227 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 RNASE11Q8TAA1 199 aaKnown RBP11.67□□□□□ -0.54
LIG1-219ENST00000600055 RBPMSQ93062 196 aaKnown RBP11.67□□□□□ -0.54
LIG1-219ENST00000600055 RRNAD1Q96FB5 475 aaKnown RBP11.67□□□□□ -0.54
LIG1-219ENST00000600055 TMEM56Q96MV1 263 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 GPR61Q9BZJ8 451 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 DNAH3Q8TD57 4116 aa11.67□□□□□ -0.54
LIG1-219ENST00000600055 PPP5D1E7EU14 171 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 BMPR1BO00238 502 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 ST8SIA3O43173 380 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 ZP3P21754 424 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 DEFA1P59665 94 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 DEFA3P59666 94 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 PRCDQ00LT1 54 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 KLF5Q13887 457 aaPredicted RBP11.66□□□□□ -0.54
LIG1-219ENST00000600055 PDLIM3Q53GG5 364 aaPredicted RBP11.66□□□□□ -0.54
LIG1-219ENST00000600055 SLC25A24Q6NUK1 477 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 HSD17B13Q7Z5P4 300 aaPredicted RBP11.66□□□□□ -0.54
LIG1-219ENST00000600055 ZNF429Q86V71 674 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 GPR146Q96CH1 333 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 GALNT14Q96FL9 552 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 CCDC140Q96MF4 163 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 KCNIP3Q9Y2W7 256 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 TMEM56-RWDD3S4R434 201 aa11.66□□□□□ -0.54
LIG1-219ENST00000600055 IGHV3-21A0A0B4J1V1 117 aa11.65□□□□□ -0.54
LIG1-219ENST00000600055 HLA-AP01891 365 aaKnown RBP11.65□□□□□ -0.54
LIG1-219ENST00000600055 SYNJ2BPP57105 145 aa11.65□□□□□ -0.54
LIG1-219ENST00000600055 MZT2BQ6NZ67 158 aa11.65□□□□□ -0.54
LIG1-219ENST00000600055 CLEC19AQ6UXS0 136 aa11.65□□□□□ -0.54
LIG1-219ENST00000600055 EEF1AKMT3Q96AZ1 226 aa11.65□□□□□ -0.54
LIG1-219ENST00000600055 SLC25A21Q9BQT8 299 aaPredicted RBP11.65□□□□□ -0.54
LIG1-219ENST00000600055 F11RQ9Y624 299 aaKnown RBP11.65□□□□□ -0.54
LIG1-219ENST00000600055 SAP30O75446 220 aa11.64□□□□□ -0.55
LIG1-219ENST00000600055 UPK1BO75841 260 aa11.64□□□□□ -0.55
LIG1-219ENST00000600055 IFNA17P01571 189 aa11.64□□□□□ -0.55
LIG1-219ENST00000600055 BTCP35070 178 aa11.64□□□□□ -0.55
LIG1-219ENST00000600055 RPEL1Q2QD12 228 aa11.64□□□□□ -0.55
LIG1-219ENST00000600055 ACSM6Q6P461 480 aa11.64□□□□□ -0.55
LIG1-219ENST00000600055 FAM219AQ8IW50 185 aa11.64□□□□□ -0.55
LIG1-219ENST00000600055 OR2C3Q8N628 320 aa11.64□□□□□ -0.55
LIG1-219ENST00000600055 SLC35G3Q8N808 338 aa11.64□□□□□ -0.55
LIG1-219ENST00000600055 PLEKHA3Q9HB20 300 aa11.64□□□□□ -0.55
LIG1-219ENST00000600055 CACNG5Q9UF02 275 aa11.64□□□□□ -0.55
LIG1-219ENST00000600055 WI2-2373I1.2A0A1W2PRP0 233 aa11.63□□□□□ -0.55
LIG1-219ENST00000600055 PLA2G10O15496 165 aa11.63□□□□□ -0.55
LIG1-219ENST00000600055 RBMS2Q15434 407 aaKnown RBP11.63□□□□□ -0.55
LIG1-219ENST00000600055 TMEM128Q5BJH2 165 aa11.63□□□□□ -0.55
LIG1-219ENST00000600055 LYZL2Q7Z4W2 148 aa11.63□□□□□ -0.55
LIG1-219ENST00000600055 HAPLN4Q86UW8 402 aa11.63□□□□□ -0.55
LIG1-219ENST00000600055 IL22RA2Q969J5 263 aa11.63□□□□□ -0.55
LIG1-219ENST00000600055 PALMDQ9NP74 551 aa11.63□□□□□ -0.55
LIG1-219ENST00000600055 ZC4H2Q9NQZ6 224 aa11.63□□□□□ -0.55
LIG1-219ENST00000600055 THYN1Q9P016 225 aa11.63□□□□□ -0.55
LIG1-219ENST00000600055 FLVCR2Q9UPI3 526 aa11.63□□□□□ -0.55
LIG1-219ENST00000600055 K7EIL1 84 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 NDUFB6O95139 128 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 NXPH3O95157 252 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 OR2C1O95371 312 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 VAMP1P23763 118 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 ARL3P36405 182 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 PPP1R1AQ13522 171 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 ANKRD55Q3KP44 614 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 IL34Q6ZMJ4 242 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 REC114Q7Z4M0 266 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 LGI3Q8N145 548 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 CENPSQ8N2Z9 138 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 OR1P1Q8NH06 330 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 ZNF502Q8TBZ5 544 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 CXorf58Q96LI9 332 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 PDCD10Q9BUL8 212 aa11.62□□□□□ -0.55
LIG1-219ENST00000600055 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.62□□□□□ -0.55
LIG1-219ENST00000600055 TRBV7-1A0A0A6YYK4 115 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 K7EIM0 57 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 CYB5BO43169 146 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 LYRM1O43325 122 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 GGCTO75223 188 aaKnown RBP11.61□□□□□ -0.55
LIG1-219ENST00000600055 SFT2D2O95562 160 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 CLEC3BP05452 202 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 ANXA3P12429 323 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 GPR183P32249 361 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 HOXA1P49639 335 aaPredicted RBP11.61□□□□□ -0.55
LIG1-219ENST00000600055 INSL3P51460 131 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 ERHP84090 104 aaKnown RBP11.61□□□□□ -0.55
LIG1-219ENST00000600055 AARDQ4LEZ3 155 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 ZNF114Q8NC26 417 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 OR9G4Q8NGQ1 327 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 MRAPQ8TCY5 172 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 VN1R17PQ8TDU5 208 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 MISP3Q96FF7 219 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 OR4C12Q96R67 309 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 ELOVL1Q9BW60 279 aa11.61□□□□□ -0.55
LIG1-219ENST00000600055 A0A0B4J2A0 478 aa11.6□□□□□ -0.55
LIG1-219ENST00000600055 SPCS3P61009 180 aa11.6□□□□□ -0.55
LIG1-219ENST00000600055 ASAH1Q13510 395 aa11.6□□□□□ -0.55
LIG1-219ENST00000600055 TATDN3Q17R31 274 aa11.6□□□□□ -0.55
LIG1-219ENST00000600055 NMSQ5H8A3 153 aa11.6□□□□□ -0.55
LIG1-219ENST00000600055 FAM209BQ5JX69 171 aa11.6□□□□□ -0.55
LIG1-219ENST00000600055 C11orf87Q6NUJ2 197 aa11.6□□□□□ -0.55
LIG1-219ENST00000600055 OR1L6Q8NGR2 347 aa11.6□□□□□ -0.55
LIG1-219ENST00000600055 SCARB1Q8WTV0 552 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms