RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 VN1R17PQ8TDU5 208 aa11.46□□□□□ -0.57
TRIM28-205ENST00000595028 CCDC160A6NGH7 325 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 C2orf70A6NJV1 201 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 A8MWP6 167 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 IGKV1-5P01602 117 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 P0C879 139 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 UCP1P25874 307 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 TNFSF8P32971 234 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 AKR1C2P52895 323 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 PRCDQ00LT1 54 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 SURF2Q15527 256 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-205ENST00000595028 ASCL2Q99929 193 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 PRRT1Q99946 306 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 SOSTQ9BQB4 213 aa11.45□□□□□ -0.58
TRIM28-205ENST00000595028 THAP7Q9BT49 309 aaPredicted RBP11.45□□□□□ -0.58
TRIM28-205ENST00000595028 RBM38Q9H0Z9 239 aaKnown RBP11.45□□□□□ -0.58
TRIM28-205ENST00000595028 C14orf166Q9Y224 244 aaKnown RBP11.45□□□□□ -0.58
TRIM28-205ENST00000595028 ANKRD20A5PA0PJZ0 165 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 TMEM213A2RRL7 107 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 IZUMO1RA6ND01 250 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 FABP12A6NFH5 140 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 B3GALNT1O75752 331 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 ATG12O94817 140 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 CLEC3BP05452 202 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 FRMD6-AS1P0C7T7 363 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 EDN2P20800 178 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 TRIM16LQ309B1 348 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 SLC25A24Q6NUK1 477 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 Q8N1Y9 231 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 ZNF114Q8NC26 417 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 OR1L6Q8NGR2 347 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 OR1P1Q8NH06 330 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 DYNLRB2Q8TF09 96 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 C5orf66Q9H5L9 145 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 ZC4H2Q9NQZ6 224 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 SLC2A8Q9NY64 477 aa11.44□□□□□ -0.58
TRIM28-205ENST00000595028 K7EIM0 57 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 TGOLN2O43493 480 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 FOLR2P14207 255 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 HSPE1P61604 102 aaKnown RBP11.43□□□□□ -0.58
TRIM28-205ENST00000595028 IZUMO4Q1ZYL8 232 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 SP6Q3SY56 376 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 CD300EQ496F6 205 aaPredicted RBP11.43□□□□□ -0.58
TRIM28-205ENST00000595028 FAM106AQ4KMX7 169 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 SGPP2Q8IWX5 399 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 OR2C3Q8N628 320 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 CACNG8Q8WXS5 425 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 ATP6V0BQ99437 205 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 RTBDNQ9BSG5 229 aaPredicted RBP11.43□□□□□ -0.58
TRIM28-205ENST00000595028 NAA60Q9H7X0 242 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 PLEKHA3Q9HB20 300 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 U3KQK5 164 aa11.43□□□□□ -0.58
TRIM28-205ENST00000595028 IGHV3-21A0A0B4J1V1 117 aa11.42□□□□□ -0.58
TRIM28-205ENST00000595028 C3orf84H3BNL1 204 aa11.42□□□□□ -0.58
TRIM28-205ENST00000595028 OR5AC1P0C628 307 aa11.42□□□□□ -0.58
TRIM28-205ENST00000595028 PLET1Q6UQ28 207 aa11.42□□□□□ -0.58
TRIM28-205ENST00000595028 UNQ9165/PRO28630Q6UXU0 137 aa11.42□□□□□ -0.58
TRIM28-205ENST00000595028 GTSCR1Q86UQ5 136 aa11.42□□□□□ -0.58
TRIM28-205ENST00000595028 OR51S1Q8NGJ8 323 aa11.42□□□□□ -0.58
TRIM28-205ENST00000595028 SCARB1Q8WTV0 552 aa11.42□□□□□ -0.58
TRIM28-205ENST00000595028 TMEM222Q9H0R3 208 aa11.42□□□□□ -0.58
TRIM28-205ENST00000595028 C21orf62Q9NYP8 219 aa11.42□□□□□ -0.58
TRIM28-205ENST00000595028 TECRQ9NZ01 308 aaKnown RBP11.42□□□□□ -0.58
TRIM28-205ENST00000595028 V9GYH0 126 aa11.42□□□□□ -0.58
TRIM28-205ENST00000595028 HYDINQ4G0P3 5121 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 A0A0B4J293 547 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 ZNF320A2RRD8 509 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 OR2T8A6NH00 312 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 A8MZ25 164 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 F8W735 103 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-205ENST00000595028 ZNF701M0R085 212 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-205ENST00000595028 IGHV4-30-4P0DP06 118 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 DEFB114Q30KQ6 69 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 SPINK9Q5DT21 86 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 SBSPONQ8IVN8 264 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 RNASE11Q8TAA1 199 aaKnown RBP11.41□□□□□ -0.58
TRIM28-205ENST00000595028 TMEM190Q8WZ59 177 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 TRIM63Q969Q1 353 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 RRNAD1Q96FB5 475 aaKnown RBP11.41□□□□□ -0.58
TRIM28-205ENST00000595028 BSCL2Q96G97 398 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-205ENST00000595028 ZNF436Q9C0F3 470 aaPredicted RBP11.41□□□□□ -0.58
TRIM28-205ENST00000595028 SCP2D1Q9UJQ7 156 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 GPR132Q9UNW8 380 aa11.41□□□□□ -0.58
TRIM28-205ENST00000595028 IGHV3-35A0A0C4DH35 117 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 A0A0G2JRQ6 117 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 TEX13DA0A0J9YY54 714 aaPredicted RBP11.4□□□□□ -0.58
TRIM28-205ENST00000595028 CRYM-AS1A6NIL9 109 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 ST8SIA3O43173 380 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 CDS2O95674 445 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 CBLN1P23435 193 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 S100A5P33763 92 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 SPSB3Q6PJ21 355 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 SLC35G3Q8N808 338 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 LHFPL5Q8TAF8 219 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 GLYATL2Q8WU03 294 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 PALMDQ9NP74 551 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 C19orf73Q9NVV2 129 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 MCUBQ9NWR8 336 aa11.4□□□□□ -0.58
TRIM28-205ENST00000595028 INS-IGF2F8WCM5 200 aa11.39□□□□□ -0.59
TRIM28-205ENST00000595028 I3L2K1 104 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms