RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 TMEM213A2RRL7 107 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 OR2T8A6NH00 312 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 TGOLN2O43493 480 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 ATG12O94817 140 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 EDN2P20800 178 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 CD81P60033 236 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 GUCA2BQ16661 112 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 OR13C8Q8NGS7 320 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 OR1P1Q8NH06 330 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 CACNG8Q8WXS5 425 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 BSCL2Q96G97 398 aaPredicted RBP11.54□□□□□ -0.56
TRIM28-203ENST00000593582 TP53RKQ96S44 253 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 ATP6V0BQ99437 205 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 PALMDQ9NP74 551 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 C21orf62Q9NYP8 219 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 STAB2Q8WWQ8 2551 aa11.54□□□□□ -0.56
TRIM28-203ENST00000593582 IGHV3-35A0A0C4DH35 117 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 H3BMQ9 156 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 CTDSPLO15194 276 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 AKR1C2P52895 323 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 MFAP2P55001 183 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 HSPE1P61604 102 aaKnown RBP11.53□□□□□ -0.56
TRIM28-203ENST00000593582 PRCDQ00LT1 54 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 TRIM16LQ309B1 348 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 ZNF57Q68EA5 555 aaPredicted RBP11.53□□□□□ -0.56
TRIM28-203ENST00000593582 SPSB3Q6PJ21 355 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 UNQ9165/PRO28630Q6UXU0 137 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 UXS1Q8NBZ7 420 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 SCARB1Q8WTV0 552 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 MARC2Q969Z3 335 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 NEURL2Q9BR09 285 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 UFC1Q9Y3C8 167 aa11.53□□□□□ -0.56
TRIM28-203ENST00000593582 IGHV3-21A0A0B4J1V1 117 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 ZNF785A8K8V0 405 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 DISC1C4P0D8 188 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 B3GALNT1O75752 331 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 CTSDP07339 412 aaPredicted RBP11.52□□□□□ -0.57
TRIM28-203ENST00000593582 ELLP55199 621 aaPredicted RBP11.52□□□□□ -0.57
TRIM28-203ENST00000593582 ERHP84090 104 aaKnown RBP11.52□□□□□ -0.57
TRIM28-203ENST00000593582 TM4SF20Q53R12 229 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 FAAP20Q6NZ36 180 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 OR2C3Q8N628 320 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 UBAC2Q8NBM4 344 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 MARCH1Q8TCQ1 289 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 ISOC1Q96CN7 298 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 WDR89Q96FK6 387 aaPredicted RBP11.52□□□□□ -0.57
TRIM28-203ENST00000593582 TM2D3Q9BRN9 247 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 ZNF436Q9C0F3 470 aaPredicted RBP11.52□□□□□ -0.57
TRIM28-203ENST00000593582 SLIRPQ9GZT3 109 aaKnown RBP11.52□□□□□ -0.57
TRIM28-203ENST00000593582 PLEKHA3Q9HB20 300 aa11.52□□□□□ -0.57
TRIM28-203ENST00000593582 C14orf166Q9Y224 244 aaKnown RBP11.52□□□□□ -0.57
TRIM28-203ENST00000593582 K7EIM0 57 aa11.51□□□□□ -0.57
TRIM28-203ENST00000593582 IGKV1-5P01602 117 aa11.51□□□□□ -0.57
TRIM28-203ENST00000593582 AKAIN1P0CW23 69 aa11.51□□□□□ -0.57
TRIM28-203ENST00000593582 IZUMO4Q1ZYL8 232 aa11.51□□□□□ -0.57
TRIM28-203ENST00000593582 SP6Q3SY56 376 aa11.51□□□□□ -0.57
TRIM28-203ENST00000593582 Q56UQ5 140 aa11.51□□□□□ -0.57
TRIM28-203ENST00000593582 ZNF114Q8NC26 417 aa11.51□□□□□ -0.57
TRIM28-203ENST00000593582 RRNAD1Q96FB5 475 aaKnown RBP11.51□□□□□ -0.57
TRIM28-203ENST00000593582 GAR1Q9NY12 217 aaKnown RBP11.51□□□□□ -0.57
TRIM28-203ENST00000593582 MRPL27Q9P0M9 148 aaKnown RBP11.51□□□□□ -0.57
TRIM28-203ENST00000593582 MLXQ9UH92 298 aa11.51□□□□□ -0.57
TRIM28-203ENST00000593582 RSL24D1Q9UHA3 163 aaKnown RBP11.51□□□□□ -0.57
TRIM28-203ENST00000593582 A0A0B4J293 547 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 IFNA17P01571 189 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 CD7P09564 240 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 C8orf88P0DMB2 117 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 UCP1P25874 307 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 SURF2Q15527 256 aaPredicted RBP11.5□□□□□ -0.57
TRIM28-203ENST00000593582 BTNL8Q6UX41 500 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 SLC16A13Q7RTY0 426 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 TMEM61Q8N0U2 210 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 OR4C16Q8NGL9 310 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 MCFD2Q8NI22 146 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 RNASE11Q8TAA1 199 aaKnown RBP11.5□□□□□ -0.57
TRIM28-203ENST00000593582 TMEM190Q8WZ59 177 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 MISP3Q96FF7 219 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 PRRT1Q99946 306 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 PDCD10Q9BUL8 212 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 DAZ1Q9NQZ3 744 aaKnown RBP11.5□□□□□ -0.57
TRIM28-203ENST00000593582 SELENOKQ9Y6D0 94 aa11.5□□□□□ -0.57
TRIM28-203ENST00000593582 TEX13DA0A0J9YY54 714 aaPredicted RBP11.49□□□□□ -0.57
TRIM28-203ENST00000593582 FABP12A6NFH5 140 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 OR11H12B2RN74 326 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 NDUFA4O00483 81 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 GSTZ1O43708 216 aaPredicted RBP11.49□□□□□ -0.57
TRIM28-203ENST00000593582 P0C879 139 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 TNFSF8P32971 234 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 SNCAP37840 140 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 HAGHQ16775 308 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 ANKRD55Q3KP44 614 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 RBPMS2Q6ZRY4 209 aaKnown RBP11.49□□□□□ -0.57
TRIM28-203ENST00000593582 SLC35G3Q8N808 338 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 SPATA25Q9BR10 227 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 CHRDL1Q9BU40 450 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 TMEM222Q9H0R3 208 aa11.49□□□□□ -0.57
TRIM28-203ENST00000593582 KMT2CQ8NEZ4 4911 aaKnown RBP11.49□□□□□ -0.57
TRIM28-203ENST00000593582 TRAV25A0A0B4J276 109 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 ANKRD20A5PA0PJZ0 165 aa11.48□□□□□ -0.57
TRIM28-203ENST00000593582 CCDC160A6NGH7 325 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms