RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 FCAMRQ8WWV6 532 aa8.63□□□□□ -1.03
CLIP3-204ENST00000590559 BORCS5Q969J3 196 aa8.63□□□□□ -1.03
CLIP3-204ENST00000590559 RNF2Q99496 336 aa8.63□□□□□ -1.03
CLIP3-204ENST00000590559 YTHDF1Q9BYJ9 559 aaKnown RBP8.63□□□□□ -1.03
CLIP3-204ENST00000590559 DIABLOQ9NR28 239 aa8.63□□□□□ -1.03
CLIP3-204ENST00000590559 TMEM14BQ9NUH8 114 aa8.63□□□□□ -1.03
CLIP3-204ENST00000590559 KLK5Q9Y337 293 aaPredicted RBP8.63□□□□□ -1.03
CLIP3-204ENST00000590559 PKD1P98161 4303 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 IGHV3OR16-8A0A075B7F1 116 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 IGHV3-21A0A0B4J1V1 117 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 I3L2K1 104 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 CHEK1O14757 476 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 ZNF207O43670 478 aaKnown RBP8.62□□□□□ -1.03
CLIP3-204ENST00000590559 RLN1P04808 185 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 RPL35AP18077 110 aaKnown RBP8.62□□□□□ -1.03
CLIP3-204ENST00000590559 LPAR6P43657 344 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 RFX2P48378 723 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 ZNF124Q15973 351 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 APRG1Q8IVJ8 170 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 OR1P1Q8NH06 330 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 PHLDA1Q8WV24 401 aaPredicted RBP8.62□□□□□ -1.03
CLIP3-204ENST00000590559 DGCR14Q96DF8 476 aaKnown RBP8.62□□□□□ -1.03
CLIP3-204ENST00000590559 FXYD6Q9H0Q3 95 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 FAM212BQ9NTI7 297 aaPredicted RBP8.62□□□□□ -1.03
CLIP3-204ENST00000590559 EHFQ9NZC4 300 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 NSG2Q9Y328 171 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 OR51B2Q9Y5P1 312 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 PCLOQ9Y6V0 5065 aa8.62□□□□□ -1.03
CLIP3-204ENST00000590559 KIAA1109Q2LD37 5005 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 IGHV7-4-1A0A0J9YVY3 117 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 MEIS3P1A6NDR6 274 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 KRASP01116 189 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 G6PCP35575 357 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 HERV-K104P61576 105 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 LYSMD2Q8IV50 215 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 TMEM217Q8N7C4 229 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 ZNF114Q8NC26 417 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 OR5B3Q8NH48 314 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 GATAD1Q8WUU5 269 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 ZNF2Q9BSG1 426 aaPredicted RBP8.61□□□□□ -1.03
CLIP3-204ENST00000590559 C20orf24Q9BUV8 137 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 RHPN1-AS1Q9BWJ2 59 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 CSTL1Q9H114 145 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 C11orf68Q9H3H3 251 aaKnown RBP8.61□□□□□ -1.03
CLIP3-204ENST00000590559 PRNDQ9UKY0 176 aa8.61□□□□□ -1.03
CLIP3-204ENST00000590559 C15orf61A6NNL5 157 aa8.6□□□□□ -1.03
CLIP3-204ENST00000590559 DEDDO75618 318 aa8.6□□□□□ -1.03
CLIP3-204ENST00000590559 IGKV1-39P01597 117 aa8.6□□□□□ -1.03
CLIP3-204ENST00000590559 IGKV1D-39P04432 117 aa8.6□□□□□ -1.03
CLIP3-204ENST00000590559 ERVK-16P61578 105 aa8.6□□□□□ -1.03
CLIP3-204ENST00000590559 TMEM116Q8NCL8 245 aa8.6□□□□□ -1.03
CLIP3-204ENST00000590559 SEC22AQ96IW7 307 aa8.6□□□□□ -1.03
CLIP3-204ENST00000590559 TMEM56Q96MV1 263 aa8.6□□□□□ -1.03
CLIP3-204ENST00000590559 TXN2Q99757 166 aa8.6□□□□□ -1.03
CLIP3-204ENST00000590559 NXF2Q9GZY0 626 aaKnown RBP8.6□□□□□ -1.03
CLIP3-204ENST00000590559 FKBP11Q9NYL4 201 aa8.6□□□□□ -1.03
CLIP3-204ENST00000590559 LOC100506127A0A0U1RQW1 187 aa8.59□□□□□ -1.03
CLIP3-204ENST00000590559 GPR31O00270 319 aa8.59□□□□□ -1.03
CLIP3-204ENST00000590559 PMP2P02689 132 aa8.59□□□□□ -1.03
CLIP3-204ENST00000590559 CMC4P56277 68 aaPredicted RBP8.59□□□□□ -1.03
CLIP3-204ENST00000590559 RELQ04864 619 aaPredicted RBP8.59□□□□□ -1.03
CLIP3-204ENST00000590559 Q56UQ5 140 aa8.59□□□□□ -1.03
CLIP3-204ENST00000590559 UBAC2Q8NBM4 344 aa8.59□□□□□ -1.03
CLIP3-204ENST00000590559 S100A16Q96FQ6 103 aaKnown RBP8.59□□□□□ -1.03
CLIP3-204ENST00000590559 HINT2Q9BX68 163 aa8.59□□□□□ -1.03
CLIP3-204ENST00000590559 VSIRQ9H7M9 311 aa8.59□□□□□ -1.03
CLIP3-204ENST00000590559 IFT46Q9NQC8 304 aa8.59□□□□□ -1.03
CLIP3-204ENST00000590559 RYR1P21817 5038 aa8.59□□□□□ -1.03
CLIP3-204ENST00000590559 AGRNO00468 2067 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 MPTX1A8MV57 137 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 SNAPC5O75971 98 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 TGFBR1P36897 503 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 MFAP4P55083 255 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 TAS2R46P59540 309 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 TAS2R20P59543 309 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 UBE2NLQ5JXB2 153 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 PVRIGQ6DKI7 326 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 CROCCP3Q8IVE0 287 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 CMTM1Q8IZ96 169 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 LILRB2Q8N423 598 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 TSC22D3Q99576 134 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 RARRES2Q99969 163 aa8.58□□□□□ -1.04
CLIP3-204ENST00000590559 C6orf62Q9GZU0 229 aaPredicted RBP8.58□□□□□ -1.04
CLIP3-204ENST00000590559 DYNC1H1Q14204 4646 aaKnown RBP8.58□□□□□ -1.04
CLIP3-204ENST00000590559 TRAV14DV4A0A0A6YYC5 116 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 NUPL2O15504 423 aaKnown RBP8.57□□□□□ -1.04
CLIP3-204ENST00000590559 MT-CO2P00403 227 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 HRH1P35367 487 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 RPS19P39019 145 aaKnown RBP8.57□□□□□ -1.04
CLIP3-204ENST00000590559 NANOS2P60321 138 aaKnown RBP8.57□□□□□ -1.04
CLIP3-204ENST00000590559 PRR20EP86478 221 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 PRR20CP86479 221 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 PRR20DP86480 221 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 PRR20BP86481 221 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 PRR20AP86496 221 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 PRCDQ00LT1 54 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 OR5H2Q8NGV7 314 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 OR6F1Q8NGZ6 308 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 OR11H2Q8NH07 326 aa8.57□□□□□ -1.04
CLIP3-204ENST00000590559 GPX8Q8TED1 209 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms