RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 BPESC1Q9GZL8 116 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 MANBALQ9NQG1 85 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 VAX2Q9UIW0 290 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 ARHGAP32A7KAX9 2087 aa11.41□□□□□ -0.58
LIG3-205ENST00000585941 TIMM23O14925 209 aa11.4□□□□□ -0.58
LIG3-205ENST00000585941 IGHV4-39P01824 125 aa11.4□□□□□ -0.58
LIG3-205ENST00000585941 COMPP49747 757 aaPredicted RBP11.4□□□□□ -0.58
LIG3-205ENST00000585941 MRGPRG-AS1Q2M3A8 158 aa11.4□□□□□ -0.58
LIG3-205ENST00000585941 ZNF843Q8N446 348 aa11.4□□□□□ -0.58
LIG3-205ENST00000585941 SRSF8Q9BRL6 282 aaKnown RBP11.4□□□□□ -0.58
LIG3-205ENST00000585941 SIRPDQ9H106 197 aa11.4□□□□□ -0.58
LIG3-205ENST00000585941 SLC25A22Q9H936 323 aa11.4□□□□□ -0.58
LIG3-205ENST00000585941 METTL1Q9UBP6 276 aaKnown RBP11.4□□□□□ -0.58
LIG3-205ENST00000585941 CGB1A6NKQ9 187 aa11.4□□□□□ -0.59
LIG3-205ENST00000585941 DNASE2O00115 360 aaPredicted RBP11.4□□□□□ -0.59
LIG3-205ENST00000585941 VENTXO95231 258 aa11.4□□□□□ -0.59
LIG3-205ENST00000585941 OR13C7P0DN81 318 aa11.4□□□□□ -0.59
LIG3-205ENST00000585941 FGF8P55075 233 aaPredicted RBP11.4□□□□□ -0.59
LIG3-205ENST00000585941 LGALS4P56470 323 aa11.4□□□□□ -0.59
LIG3-205ENST00000585941 PRB3Q04118 309 aaPredicted RBP11.4□□□□□ -0.59
LIG3-205ENST00000585941 WT1-ASQ06250 92 aa11.4□□□□□ -0.59
LIG3-205ENST00000585941 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.4□□□□□ -0.59
LIG3-205ENST00000585941 ZNF114Q8NC26 417 aa11.4□□□□□ -0.59
LIG3-205ENST00000585941 RXFP4Q8TDU9 374 aa11.4□□□□□ -0.59
LIG3-205ENST00000585941 SLC35E1Q96K37 410 aa11.4□□□□□ -0.59
LIG3-205ENST00000585941 PIMREGQ9BSJ6 248 aa11.4□□□□□ -0.59
LIG3-205ENST00000585941 POLR3KQ9Y2Y1 108 aaPredicted RBP11.4□□□□□ -0.59
LIG3-205ENST00000585941 TBL2Q9Y4P3 447 aaKnown RBP11.4□□□□□ -0.59
LIG3-205ENST00000585941 ZFP92A6NM28 416 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 YIF1AO95070 293 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 MOSP00540 346 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 NPBWR1P48145 328 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 PSMB3P49720 205 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 B2MP61769 119 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 LCN2P80188 198 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 KLRD1Q13241 179 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 SPTAN1Q13813 2472 aaKnown RBP11.39□□□□□ -0.59
LIG3-205ENST00000585941 TNXAQ16473 311 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 ETFRF1Q6IPR1 90 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 CFHR4Q92496 578 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 C1orf159Q96HA4 380 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 BBC3Q96PG8 261 aaPredicted RBP11.39□□□□□ -0.59
LIG3-205ENST00000585941 TPSG1Q9NRR2 321 aa11.39□□□□□ -0.59
LIG3-205ENST00000585941 TMA7Q9Y2S6 64 aaKnown RBP11.39□□□□□ -0.59
LIG3-205ENST00000585941 MYO18BQ8IUG5 2567 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 E7EUB6 86 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 CORTO00230 105 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 TOX4O94842 621 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 SNRNP70P08621 437 aaKnown RBP11.38□□□□□ -0.59
LIG3-205ENST00000585941 HOXB4P17483 251 aaPredicted RBP11.38□□□□□ -0.59
LIG3-205ENST00000585941 PRR20EP86478 221 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 PRR20CP86479 221 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 PRR20DP86480 221 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 PRR20BP86481 221 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 PRR20AP86496 221 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 GAMTQ14353 236 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 C10orf55Q5SWW7 151 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 LDLRAD2Q5SZI1 272 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 MIC13Q5XKP0 118 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 PVRIGQ6DKI7 326 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 SLC16A13Q7RTY0 426 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 SLC35E3Q7Z769 313 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 NPBQ8NG41 125 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 OR2T10Q8NGZ9 312 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 FAM168AQ92567 244 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 C19orf24Q9BVV8 132 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 HILPDAQ9Y5L2 63 aa11.38□□□□□ -0.59
LIG3-205ENST00000585941 IGLC7A0M8Q6 106 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 PRB1P04280 392 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 CNTFRP26992 372 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 UBE2E1P51965 193 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 RHOBP62745 196 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 PLGLAQ15195 96 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 RHEBQ15382 184 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 STPG3Q8N7X2 389 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 NANPQ8TBE9 248 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 LPAR2Q9HBW0 351 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 SLC45A2Q9UMX9 530 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 FLNCQ14315 2725 aa11.37□□□□□ -0.59
LIG3-205ENST00000585941 USP9XQ93008 2570 aaPredicted RBP11.37□□□□□ -0.59
LIG3-205ENST00000585941 FAM74A7A6NL05 159 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 NBR2O15453 112 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 NDUFA3O95167 84 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 MT-CO2P00403 227 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 MEF2BQ02080 365 aaPredicted RBP11.36□□□□□ -0.59
LIG3-205ENST00000585941 MMDQ15546 238 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 FAM74A3Q4VXF1 159 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 CLEC2AQ6UVW9 174 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 CYB561D1Q8N8Q1 229 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 SSMEM1Q8WWF3 244 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 FBXL15Q9H469 300 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 AKAP6Q13023 2319 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 WNK2Q9Y3S1 2297 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 M0R036 132 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 CXorf1O96002 111 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 LHFPL4Q7Z7J7 247 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 OR1P1Q8NH06 330 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 C10orf105Q8TEF2 133 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 MALSU1Q96EH3 234 aa11.36□□□□□ -0.59
LIG3-205ENST00000585941 TXNDC17Q9BRA2 123 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms